| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 412077 = | 48 (1.070) | 3 (0.070) | 3/260 | NT | 6.3% | coding (405/1185 nt) | araJ | L‑arabinose‑inducible putative transporter, MFS family |
| ? | NC_000913 | 412119 = | 44 (1.040) | coding (363/1185 nt) | araJ | L‑arabinose‑inducible putative transporter, MFS family | |||||
TCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGCCACCAGA > NC_000913/411971‑412263 | tCACCGCAATATTAAAACCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGt < 1:601047/149‑1 (MQ=255)gctctcttcgtcttacctgatgctcgccattggtcggctggtatccggctttccgcatggcgcattttttggcgtcggagcgatcgtgttatcaaaaattatcaaaCCCGGAAACCATCCCCGCCACGGCGGCGGAGACTTTTCCGGGt > 2:81938‑M1/107‑149 (MQ=255) aCCGGAATGTTAAAAACAGCGATCAATAAATAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCGGCATATTGGCGACTGTATTCCCGTAAACCATCCCCTTGACGGCGGCGGTGACTTTTCCGGGttt < 1:115889/149‑1 (MQ=255) cGCAATATTAAAAACAGCGATCAATAAAACGGTGTGACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGa > 2:174087/1‑149 (MQ=255) atTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAttt > 2:499502/1‑149 (MQ=255) ttAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtttt > 1:612057/1‑149 (MQ=255) ctacaaaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAtttt < 1:475974/145‑1 (MQ=255) caacaaCAGCCATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAAttttt < 1:518018/145‑1 (MQ=255) aaaaaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTg < 2:381966/149‑1 (MQ=255) aaaaCAGCGATTAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGa > 2:414161/1‑149 (MQ=255) aaaaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGa > 2:704493/1‑149 (MQ=255) aaaaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAAAGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACGTTTCCGGGTTTGATATGTTTTGa > 1:491048/1‑149 (MQ=255) aaaaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTGCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGa > 2:388988/1‑149 (MQ=255) aaaaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCATGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGCAAACCATCCACGCCACGGCGGCGGTGCCTTCTCCGGGTTGGATaaagtgtga > 2:719143/1‑142 (MQ=255) aaaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGAt < 2:675115/149‑1 (MQ=255) aaaCAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTGCCGGGTTTGATAATTTTTGAt < 2:372317/149‑1 (MQ=255) aGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCATGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGTGTTTGATCATTTTTGATAaca < 1:566617/149‑1 (MQ=255) cGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACg > 2:240972/1‑149 (MQ=255) cGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACg > 2:212091/1‑149 (MQ=255) aTCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCGGGGTTTGATACTTTTTGATAACACGAt > 2:283043/1‑149 (MQ=255) aTCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGAt < 1:110713/149‑1 (MQ=255) aTCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGGGACTCTTCCGGGTTTGATAATTTTTGATAACACGAt > 2:338146/1‑149 (MQ=255) ccAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATg < 1:721991/149‑1 (MQ=255) ggcttgccgcatggtgcatttcttggcgtcggtgcgatcgtgttatcaaaaattatcaaaCCCGGAACCCATCCCCGCCCCGGCGGCGGTGACTTTCCCGGGTTTGATAAGTTTTGATAACACGATCGCTCCGACGCCAAAAAATgcgc > 1:665118‑M1/61‑149 (MQ=255) aTTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGc > 1:159866/1‑149 (MQ=255) tGACTTAACTACGTTCCCTGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGaaa < 1:499568/149‑1 (MQ=255) gcgcattttttggcgtcggagcgatcgtgttatcaaaacttatcaaacccgggaaagtcaccgccgccggggcggggatgggttccgggTTTGATAATTTTTGATAACACGATCGCACCGACGCCAAGAAATGCACCATGCGGCAAGcc > 1:665118‑M2/90‑149 (MQ=255) aCGTTCCCAGCGGCATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGTAAAGCCGGATAcc > 1:565981/1‑149 (MQ=255) cGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGCAAACCATCCCCGCCACGGCGGCGGTGAATTTTCCGGGTTTGATAATTTTTGATAACACGGTCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGCATAccc > 2:643118/1‑148 (MQ=255) gTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCCCCGACGCCAAAAAATGCGCCACGCGGCAAGCCGCATACCac > 1:720875/1‑148 (MQ=255) gTTCCCAGCGGAATGCACAGCAAATTAGCGACTGTAATCCCGAAAACCATCCCCGCAACGAAGGCGGAGACTGATCCGGGTTTGATAATTTTTGATAAAACAAACGCGCCCACGCAAAAAAATACGCCAGGCGGAAAACCCGAGAcaca > 2:247019/1‑146 (MQ=255) aGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGAcc < 1:308310/149‑1 (MQ=255) gCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAGAAAATGCGCCATGCAGAAAGCCGGATACCAGCCGACCAATGGCgc > 1:329775/1‑148 (MQ=255) gCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGa < 2:100725/149‑1 (MQ=255) gCCCAGCAAATCGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGa < 2:577831/149‑1 (MQ=255) cccAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAg < 2:229868/149‑1 (MQ=255) aaTTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAgg < 1:174087/149‑1 (MQ=255) aTTGGCGACTGTCAGCCCGGAAACCATCCCCGCCACGGCGGCGGTGACGTTTCCGGGTTTGATAATTTTTGATAACACGAGCGCTCCGCCGCCAAAAAACGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGt < 1:131750/149‑1 (MQ=255) ttGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTa > 1:610790/1‑149 (MQ=255) tGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGTCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTaa < 1:516049/149‑1 (MQ=255) tGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTaa < 1:735442/149‑1 (MQ=255) tCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAAGGGCGAGCATCAGGTAAGACGAagag > 2:158315/1‑149 (MQ=255) aTCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCCTGCGGAAAGCCGGATACCAGCCGCCCCATGGCGAGCAGCAGGTAAGACGAagagag > 2:15800/1‑149 (MQ=255) acccggaaaagtctccgccgccgtggcggggatggtttccgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGc > 2:81938‑M2/44‑149 (MQ=255) CCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACATGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAACCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGGGGGCGt < 2:417367‑M1/149‑1 (MQ=255) CCGGAAACCATCCCCGCCACGGCGGCGGGGACTTTTCCGGGTTTAACACTCAGTGTGATCAGGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAAGGGCGAGCATCAGGTAAGACGAAGAGAGCGt < 1:551680‑M1/149‑1 (MQ=255) cATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGTCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATgg < 1:212091/149‑1 (MQ=255) cATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATgg < 1:240972/149‑1 (MQ=255) ccccGCCACGGCGGCGGTGACTTTTCCGGGCGTGAGAATTTTTTATAACCCAGTCACTCCGACGCCAAAAAATGCGCCATGCGTAATGCCGGATACCAGCCGACCAATGGCGAGCATCAGTTAAGTCGAAGATAGCGTGAACATGGCGt < 2:64778/149‑1 (MQ=255) ctcGCTACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCTCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGTCGTACAGAGCGTGCACATTGctgt > 2:528731/3‑146 (MQ=255) cccggcggcggTCACTTTTCCGGGGTTGGTAATTTTTGATAACACGGTCGCTCCGACGCCAACAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCaa < 2:625300/147‑1 (MQ=255) ggggatggttacggggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGcac < 2:665118‑M2/133‑1 (MQ=255) ggTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGcaca > 2:525421/1‑149 (MQ=255) ggTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGcaca > 2:142176/1‑149 (MQ=255) aCTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCGCAACGc > 2:72050/1‑149 (MQ=255) ttttCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCCAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGCAGCAAAACGcca > 2:307479/1‑149 (MQ=255) ttttCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATCGCGAGCATCAGGTAAGACGAAGAGAGCGAGAACATGGCGTTGCCAATGACGCACAACAcca > 1:291092/1‑149 (MQ=255) cgggTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGACGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGCCAACAGa > 2:596697‑M2/5‑149 (MQ=255) | TCACCGCAATATTAAAAACAGCGATCAATAAAAAGGTGTAACGCCAGCTAAATTCCTGACTTAAATACGTTCCCAGCGGAATGCCCAGCAAATTGGCGACTGTCATCCCGGAAACCATCCCCGCCACGGCGGCGGTGACTTTTCCGGGTTTGATAATTTTTGATAACACGATCGCTCCGACGCCAAAAAATGCGCCATGCGGAAAGCCGGATACCAGCCGACCAATGGCGAGCATCAGGTAAGACGAAGAGAGCGTGAACATGGCGTTGCCAATGACGCACAACGCCACCAGA > NC_000913/411971‑412263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |