New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1048957 =	39 (0.870)	3 (0.070)	3/268	NT	8.2%	coding (376/645 nt)	gfcB	O‑antigen capsule production lipoprotein
	?	NC_000913	1048998 =	29 (0.660)					coding (335/645 nt)	gfcB	O‑antigen capsule production lipoprotein

CAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTA  >  NC_000913/1048850‑1049139                                                                                                                                                     |                                                                                                                                              ttatcccaggataacggcatgctggttacccacaatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggaccctctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCa                                                                                                                                               >  2:146235‑M1/108‑149 (MQ=255)  aGCACATTGCGACCCGCCATATTCAGCGGCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                                                              <  1:476050/149‑1 (MQ=255)  aGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGCACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                                                              <  1:662461/149‑1 (MQ=255)  aGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                                                              <  2:784755/149‑1 (MQ=255)    tcccgggataacggcatgctggttacccaccatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggacccgctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCagag                                                                                                                                            >  2:47503‑M1/105‑149 (MQ=255)       aTTGCGACCCGCAGTATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGAAACCCTAAAAGGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGt                                                                                                                                         >  1:547372/1‑149 (MQ=255)            gACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGc                                                                                                                                    <  2:59637/149‑1 (MQ=255)                  cAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGaa                                                                                                                              >  1:796575/1‑149 (MQ=255)                     tatTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCACAGGGTCCTGCCCGGAAttt                                                                                                                           >  2:244207/1‑149 (MQ=255)                        tCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTc                                                                                                                        >  2:417326/1‑149 (MQ=255)                             gTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTc                                                                                                                   >  1:1454/1‑149 (MQ=255)                               ctctAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCCGACAGCGGACGAAGGACTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCca                                                                                                                 <  1:782265/149‑1 (MQ=255)                                tctgagccAGCAAAGGAAAAAGCAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCCCTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcag                                                                                                                <  2:57313/143‑1 (MQ=255)                                tctAATCCAGCAAAGGAAAAAGTAGGACTCAGGGTCGCAGAGCGAAAATGGTTGTCTGCACTCCAGAGAATATCGCGCGGCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGCGGGTCCTGCCCGTAATTTGTCACTTCcag                                                                                                                <  1:506504/149‑1 (MQ=255)                                   aaaccAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcagcag                                                                                                             <  1:517203/146‑1 (MQ=255)                                   aaTCCAGCAAAGGAAAAAGTAGAACCCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcagcag                                                                                                             <  2:330698/149‑1 (MQ=255)                                    aTCCCGCAAGGGAAAAAGTAGAGCTCTGGGTCGCAGAGCGAAAAGGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGa                                                                                                            <  2:242115/149‑1 (MQ=255)                                         gCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGattatt                                                                                                       <  1:522934/149‑1 (MQ=255)                                             aGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGAttattatta                                                                                                   <  2:461858/149‑1 (MQ=255)                                                 aaaaGTAGAACTCAGGGTCGCAGGGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGtt                                                                                               <  2:779197/149‑1 (MQ=255)                                                     gTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGAc                                                                                           >  1:722293/1‑149 (MQ=255)                                                              aGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaa                                                                                  <  1:754371/149‑1 (MQ=255)                                                                ggTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaaaa                                                                                >  1:526700/1‑149 (MQ=255)                                                                ggTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaaaa                                                                                <  2:1454/149‑1 (MQ=255)                                                                  tCGCAGAGCGAAAATGGGTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGa                                                                              <  1:31188/149‑1 (MQ=255)                                                                    gCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTCCGCAGAGGGTCCTGAGCGATGTAGGACGCTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGGCg                                                                            >  1:22760/1‑149 (MQ=255)                                                                      agagCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTc                                                                          <  2:418158/149‑1 (MQ=255)                                                                              aaTGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGAGGGTTTTTAAAAGACGTCCATTGTgg                                                                  >  1:540044/1‑149 (MQ=255)                                                                                          cACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATg                                                      >  2:392663/1‑149 (MQ=255)                                                                                                       atCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGACGTTATCCTggg                                         >  1:360183/1‑149 (MQ=255)                                                                                                        ctctgcgtaacgcgctggcaataaaagatggcagccgctggacgcAGCGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATGGTGGGTAACCAGCATGCCGTTATCCCGGGa                                        >  2:47503‑M2/46‑149 (MQ=255)                                                                                                           tgcgtaacgcgctggcaataaaagatggcagccgctggacgcAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGCCGTTATCCTGGGATaa                                     >  2:146235‑M2/43‑149 (MQ=255)                                                                                                                aacgcgctggcaataaaagatggcagccgctggacgcAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCAtt                                >  1:90869‑M2/38‑149 (MQ=255)                                                                                                                            aTCTTTCATTGCCAGCGCGTTACGCAGAGCGTCCTGCCCGAAATGTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTttgttctt                    <  1:417326/149‑1 (MQ=255)                                                                                                                                 ttATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTtgttcttgttct               >  1:513160/1‑149 (MQ=255)                                                                                                                                         aGCGCGTTACTCAGAGGGTCTTGCCCGGAATTTGGCACTTCCAGCAGATTATTAGTAAGTTTGCCGGTTTTTAAAAGCCGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATcc       <  1:765483/149‑1 (MQ=255)                                                                                                                                         aGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATcc       <  1:733616/149‑1 (MQ=255)                                                                                                                                              gTTACGCTGTGGGCCCTGCCCGGAATTTCTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTAGAATGTCCTCTTTCTTTGTTCTTGTTCTATATATCCCAGTa  <  2:371655/149‑1 (MQ=255)                                                                                                                                              gTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTa  <  1:169989/149‑1 (MQ=255)                                                                                                                                              cttACGCATATGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGGCCATTGTGGGTAACCAGCATGGCGTTATCCTTGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTa  <  2:72717/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTA  >  NC_000913/1048850‑1049139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.