New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1396531 =	NA (NA)	4 (0.090)	3/264	NT	NA	coding (456/1017 nt)	insH1	IS5 transposase and trans‑activator
	?	NC_000913	= 1428264	NA (NA)					coding (463/981 nt)	insH1	IS5 transposase and trans‑activator

GTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAATTCAT  >  NC_000913/1428130‑1428411                                                                                                                                       |                                                                                                                                                    gTTGGCCGCGGTGGTGACCAGGATGTGGGTCAGGCCACTCTTGGCAGCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                                                                                                                                       >  1:357773/1‑149 (MQ=17)     gCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGc                                                                                                                                   >  1:493256/1‑149 (MQ=32)                  ccAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCACTGAtggtg                                                                                                                      >  1:648086/1‑149 (MQ=17)                        tgtgGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGATTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATcc                                                                                                                >  2:335524/1‑149 (MQ=17)                         gttggTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATcca                                                                                                               <  2:136362/146‑1 (MQ=21)                                  gCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCAGCTGATTGCCTTTCTTGGTCTGATGCATCTACGGATCGCGTTGATGCTCTATGTTCTTGGTAGAGCTGGGTGGCTCCACCCAGAAGGCATCCACCAAAGTGc                                                                                                      >  2:397522/1‑149 (MQ=11)                                    cACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCGTCCACCAAAGTGCCt                                                                                                    >  1:446625/1‑149 (MQ=37)                                          tGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGtc                                                                                              >  2:187543/1‑149 (MQ=40)                                            gcctCGACGCCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTCTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGtcat                                                                                            <  2:526524/146‑1 (MQ=255)                                               tCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTcatcat                                                                                         <  1:147604/149‑1 (MQ=255)                                                    acCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGCCGc                                                                                    >  2:81191/1‑149 (MQ=255)                                                      cAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGGCATCATGCCGCCt                                                                                  >  1:93164/1‑149 (MQ=255)                                                       aaTGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCCTGACGccgg                                                                                 >  2:527622/1‑147 (MQ=255)                                                          gtgGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGTGGCATCATGCCGCGTGCtg                                                                              <  2:775886/149‑2 (MQ=255)                                                             ggCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCACCTCCGGAGCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCGTCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCgg                                                                           <  1:591022/149‑1 (MQ=255)                                                                      gCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCcagccagc                                                                  >  1:81949/1‑149 (MQ=40)                                                                            gTGCCACTGATTGCCTTTCGTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGa                                                            <  1:104314/149‑1 (MQ=255)                                                                             tGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGAt                                                           >  1:747977/1‑149 (MQ=40)                                                                             tGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGGTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAGGAGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGGCAGCGGTTGAt                                                           >  1:348188/1‑149 (MQ=11)                                                                                             tCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGa                                           <  1:296864/149‑1 (MQ=40)                                                                                              cTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGAc                                          >  1:620400/1‑149 (MQ=255)                                                                                              cTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGACTGATGGTCTTGAACAATTGAc                                          >  2:183600/1‑149 (MQ=255)                                                                                                  gTCTTATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTCACGGGc                                      <  2:695624/149‑1 (MQ=255)                                                                                                   tCTGATGCATCTCCGGATCGCGTTGCTGCCCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCGTCGGCCGGCCAACGATTGATGGTCTTGCACAATTGACGGGcc                                     >  1:502432/1‑149 (MQ=14)                                                                                                     tGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAg                                   >  2:535974/1‑149 (MQ=255)                                                                                                       aTGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAGAGTGCCTCGGGTCATCATGACACCTGCTTCGGACAGCCCGCGGGTAGTGGGTTTGGACAATTGACGGGCGAGtt                                 >  2:522319/1‑149 (MQ=14)                                                                                                           aTCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGCCGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtg                             <  1:228778/149‑1 (MQ=255)                                                                                                              tcCGGATCGCGTTGCTTCTCTTTGTTCTTGGTCGAGCTGGCTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGAtgctg                          <  1:126053/149‑1 (MQ=255)                                                                                                                 ggATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTc                       <  1:603099/149‑1 (MQ=255)                                                                                                                       cgTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAGGGGGGCATCCACTAAAGTCCTGCTGTTCGGCATGACGCCTGCGTCGGCCAGCCAGCGATTGATGGTCTTGACCAATTGACGGGCCAGTTGATGCTGCGCGCGCAg                 >  2:367432/1‑149 (MQ=14)                                                                                                                        gTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGCCTTGAACAATTGACGGCCCAGTTTCTGCTGCCcgggcggg                >  1:237549/1‑149 (MQ=14)                                                                                                                          tgttgctCTTCGTCTCTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTg              <  1:577683/146‑1 (MQ=14)                                                                                                                          tgctgcTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTg              <  1:256324/149‑1 (MQ=255)                                                                                                                          tgctgcTCTTTGTTCTTGGTAGAGCTGCGCGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTg              <  1:149315/149‑1 (MQ=255)                                                                                                                           gctgctCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTgg             >  2:119986/1‑149 (MQ=255)                                                                                                                           gctgctCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTgg             <  1:312194/149‑1 (MQ=255)                                                                                                                           gccgctCTTTGTTCCTGGTAGAGCTGGGTGCCTACATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGCCGCCTGCTTCGGCCAGCCAGCGATTGCTGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTgg             <  2:156421/146‑1 (MQ=14)                                                                                                                               ctctTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGa         >  2:139632/1‑149 (MQ=255)                                                                                                                               ctctTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATGGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGa         >  2:778127/1‑149 (MQ=255)                                                                                                                                 ctTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGaaa       <  1:663094/149‑1 (MQ=255)                                                                                                                                 ctTCGTCCTTGGCAGAGCTCGGGGCCTCAATGATGGTGGCACCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGaaa       <  1:145263/149‑1 (MQ=14)                                                                                                                                   ttGTTCTTGGGAGGGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAAtt     <  2:165389/149‑1 (MQ=255)                                                                                                                                    tGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAATTc    <  1:2766/149‑1 (MQ=255)                                                                                                                                      ttCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGGGGCGGaaaattgt  >  2:596121/1‑144 (MQ=255)                                                                                                                                       |                                                                                                                                                    GTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGACGGGCCAGTTGATGCTGCTCGAGCAGGTGGCGGAAATTCAT  >  NC_000913/1428130‑1428411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.