New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1469240NA (NA)42 (0.930) 31/276 NT 100% intergenic (‑91/‑1) insC1/ydbA IS2 repressor TnpA/pseudogene, autotransporter homolog; interrupted by IS2 and IS30
?NC_000913 = 1652258 0 (0.000)pseudogene (708/1158 nt) intQ pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related

Only 100 of 103 total aligned reads displayed.

GTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTA  >  NC_000913/1652112‑1652402
                                                                                                                                                   |                                                                                                                                                
aaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatttgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGc                                                                                                                                                 <  1:494837‑M2/7‑1 (MQ=255)
  ccttgcagaggcgttcgcgcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagtgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCa                                                                                                                                               >  2:693393‑M2/141‑149 (MQ=255)
  ccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtcaagggttaagtgataacagatatctggcaatataggggcaaatccATTAAGCCa                                                                                                                                               >  2:441149‑M2/141‑149 (MQ=255)
   cttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatattggggcaaatccATTAagcccg                                                                                                                                              >  2:7578‑M2/140‑147 (MQ=255)
   cttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggatatcgctcgccacgggaatatctgcggcagcgggcttgtaatggggtaagtgataacaggtgtctggaaatataggcgcaaatgcATTAAGCCAg                                                                                                                                              >  2:196200‑M2/140‑149 (MQ=255)
   cGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGCTGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTAATTAAGtagac                                                                                                                                             <  1:67240‑M2/149‑6 (MQ=255)
        agaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAatg                                                                                                                                         >  2:399652‑M2/135‑148 (MQ=255)
          aggcgttcgagcagtataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGa                                                                                                                                       <  2:681957‑M2/17‑1 (MQ=255)
              gttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGct                                                                                                                                   >  1:122832‑M2/129‑149 (MQ=255)
              gttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaaagggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACgcc                                                                                                                                   >  2:634719‑M2/129‑148 (MQ=255)
               cTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAACAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaa                                                                                                                                 <  1:377189‑M2/149‑18 (MQ=255)
                  gagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggccgcgggcttgtactgggttaagtgataacagatgtctggaaaaataggggcaaatccATTAAGCACGCAATCGAGGCTGTcc                                                                                                                               >  2:89872‑M2/125‑149 (MQ=255)
                  gagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTcc                                                                                                                               >  2:322384‑M2/125‑149 (MQ=255)
                     gCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctcca                                                                                                                           >  1:756415‑M2/1‑126 (MQ=255)
                      cACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccag                                                                                                                          <  2:144240‑M2/149‑25 (MQ=255)
                      cACTTGGATGGGAGGACATAGATCTGAAAAAAGGAACAATGATGATCAGGAGAAATTTAGCACAAGACCGCTTCACGGTACAAAAAACACACGCGGGAACCAAACCGGGCATCCATCCAATAAAGtagactggcccccgaaatctccag                                                                                                                          <  2:270294‑M2/149‑25 (MQ=255)
                       aCGTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccaga                                                                                                                         >  2:419363‑M2/1‑124 (MQ=255)
                         ttGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagaca                                                                                                                       <  1:729608‑M2/149‑28 (MQ=255)
                          taacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatctctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccCTTAAGCCAGCAATCGACGCCACCCGGAGGCAg                                                                                                                       >  2:506763‑M2/117‑149 (MQ=255)
                            gATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaacc                                                                                                                    <  2:234678‑M2/149‑31 (MQ=255)
                             aTGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCTAACAGAAAGGCCACTGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaacca                                                                                                                   >  1:786497‑M2/1‑118 (MQ=255)
                               gggAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaat                                                                                                                 >  1:375516‑M2/1‑116 (MQ=255)
                               gggAGGACATAGATCCGAAAAATGGAACCATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaat                                                                                                                 >  2:706889‑M2/1‑116 (MQ=255)
                                atggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACa                                                                                                                 <  1:655126‑M2/39‑1 (MQ=255)
                                 gaggaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatat                                                                                                               <  2:8919‑M2/149‑36 (MQ=255)
                                 gaggaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGATTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTAATTAAGtagactggccccctgaatctcccgacaaccaatat                                                                                                               <  1:397592‑M2/149‑36 (MQ=255)
                                  ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACAtt                                                                                                               <  1:695730‑M2/41‑1 (MQ=255)
                                     atccggatagtgcgcttggttagccctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAAc                                                                                                            <  2:311637‑M2/44‑1 (MQ=255)
                                     atccgcatggggcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAAc                                                                                                            <  2:311758‑M2/44‑1 (MQ=255)
                                     atccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccAATAAATTTACAATTGACGCTCTCCGGAGTCAGATGACATTAAc                                                                                                            <  1:793428‑M2/44‑1 (MQ=255)
                                     aCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcact                                                                                                           >  2:536835‑M2/1‑110 (MQ=255)
                                          gATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttattt                                                                                                      >  1:396165‑M2/1‑105 (MQ=255)
                                          gATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttattt                                                                                                      >  2:490675‑M2/1‑105 (MQ=255)
                                              tGAAAAATGGCACAATGATGATCAGGAGAAATCTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagt                                                                                                  >  2:185236‑M2/1‑101 (MQ=255)
                                              tGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagt                                                                                                  <  2:69667‑M2/149‑49 (MQ=255)
                                              gtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGCCTGAg                                                                                                   >  2:82873‑M2/97‑149 (MQ=255)
                                                aaaaaTGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtga                                                                                                <  2:574439‑M2/149‑51 (MQ=255)
                                                 cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCaa                                                                                                <  1:475130‑M2/56‑1 (MQ=255)
                                                 cgctgggttatcgatcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTTCGGAGTCAGATGACATTAACGAGACTGAGCaa                                                                                                >  1:544763‑M2/94‑149 (MQ=255)
                                                 cgcggggttatggctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCaa                                                                                                <  1:701256‑M2/56‑1 (MQ=255)
                                                    tgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGGCTGAGCAAaga                                                                                             >  2:683559‑M2/91‑149 (MQ=255)
                                                    tgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAaga                                                                                             >  1:593015‑M2/91‑149 (MQ=255)
                                                    aTGGAACATTGATGGTCCGGGTGAATGTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagt                                                                                            >  1:145987‑M2/1‑95 (MQ=255)
                                                    aTGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagt                                                                                            >  1:467223‑M2/1‑95 (MQ=255)
                                                           aaTGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaata                                                                                     <  1:779069‑M2/149‑62 (MQ=255)
                                                            atgatgATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatac                                                                                    <  1:246755‑M2/149‑63 (MQ=255)
                                                              ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAAGCAAAACAAAAAGCATATCAtt                                                                                   >  1:184818‑M2/81‑149 (MQ=255)
                                                              ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaactgctaacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCAtt                                                                                   >  2:191157‑M2/81‑149 (MQ=255)
                                                                    acgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGtt                                                                             >  1:169519‑M2/75‑149 (MQ=255)
                                                                       ggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCAc                                                                          >  2:46299‑M2/72‑149 (MQ=255)
                                                                           aaTTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactag                                                                     >  2:186132‑M2/1‑72 (MQ=255)
                                                                            aTTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagt                                                                    >  1:144240‑M2/1‑71 (MQ=255)
                                                                             tctgcggcggcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCaga                                                                    <  2:233681‑M2/84‑1 (MQ=255)
                                                                              ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaagtatagggggaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAGGAGCATATCATTGATGTTCacttcgggg                                                                   >  2:644430‑M2/65‑145 (MQ=255)
                                                                              ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatgtaggggcaaatccATTGAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTCAAGCGCATGGGCAAAGAGCATATCGTTGGTGTTCACATTagag                                                                   >  2:263071‑M2/65‑149 (MQ=255)
                                                                               tgcggcggcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCagaga                                                                  <  1:17458‑M2/86‑1 (MQ=255)
                                                                               tgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCagaga                                                                  >  2:289757‑M2/64‑149 (MQ=255)
                                                                               cgcggccgcgggctggtaatgggttaagtgataacagatgtctggaaagataggggcaaatccATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGACCACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCagaga                                                                  <  1:17482‑M2/86‑1 (MQ=255)
                                                                                  ggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCCCTTCAGAGAGTa                                                               >  2:546697‑M2/61‑149 (MQ=255)
                                                                                  cAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAGGtagactggccccctgagtctccagacaaccaatatcacttaaataagtgatagtattaatactattttttagcctattcatttg                                                              <  2:30696‑M2/149‑85 (MQ=255)
                                                                                   aaaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgga                                                             <  1:493482‑M2/149‑86 (MQ=255)
                                                                                   aaaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACAAATCGGGGCATTCATCTTATTAAGaagactggccccctgactctccagacaaccaatatcacttaaataagtgctagtcttaattctagtttttagagtagtccttgga                                                             <  2:657773‑M2/149‑86 (MQ=255)
                                                                                     aaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagg                                                           <  2:394499‑M2/149‑88 (MQ=255)
                                                                                        gACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagattttagactagtcattggagaac                                                         >  1:421450‑M2/1‑60 (MQ=255)
                                                                                           cttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaac                                                      <  1:122521‑M2/98‑1 (MQ=255)
                                                                                           cttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaac                                                      <  1:684958‑M2/98‑1 (MQ=255)
                                                                                           cGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacaga                                                      <  1:29189‑M2/149‑93 (MQ=255)
                                                                                           cGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacaga                                                      <  1:272546‑M2/149‑93 (MQ=255)
                                                                                             tttCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggggaacagctg                                                    <  1:3935‑M2/149‑95 (MQ=255)
                                                                                              tttcttgtactaaACATACATGCCAGAACCAACCGGGTCATTCATCTTATTAAGtagcctggccccgtgaatctccacacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatga                                                   >  2:397592‑M2/7‑54 (MQ=255)
                                                                                              ttCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatga                                                   >  1:8919‑M2/1‑54 (MQ=255)
                                                                                               taatgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacagaa                                                  >  1:569214‑M2/48‑149 (MQ=255)
                                                                                                 atgggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATAATTGATGTTCACTTCAGAGAGAATGGCAGAACAGaaaa                                                >  2:432196‑M2/46‑149 (MQ=255)
                                                                                                   ggTAACAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaacactagtttttagactagtcattggagaacagatgattgat                                              >  1:430284‑M2/1‑49 (MQ=255)
                                                                                                    ggttaagtgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACa                                             >  1:356587‑M2/43‑149 (MQ=255)
                                                                                                         aaaaaCACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta                                        >  2:690231‑M2/1‑43 (MQ=255)
                                                                                                         aaaaaCACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta                                        <  1:511553‑M2/149‑107 (MQ=255)
                                                                                                         aaaaaCACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtaaactggccccccgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta                                        >  2:25678‑M2/1‑43 (MQ=255)
                                                                                                          aaaaCACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaataacacttaaataagtgatagtcttaataatagtttttagactagtcattggaaaaacgatagtggatgtcttgg                                       <  1:138647‑M2/149‑108 (MQ=255)
                                                                                                           tgataccagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCCCCGGAGACAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTCAAGAGAGTATGGCTGAACAGAAAAACAAAAACGc                                      >  2:560781‑M2/36‑149 (MQ=255)
                                                                                                           tgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGc                                      >  2:293996‑M2/36‑149 (MQ=255)
                                                                                                           tgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGc                                      <  1:46299‑M2/114‑1 (MQ=255)
                                                                                                           tgataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTAAGGCAGAAAATAAAAACAAAAATGc                                      >  1:377991‑M2/36‑149 (MQ=255)
                                                                                                             ataacagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCAc                                    >  2:460822‑M2/34‑149 (MQ=255)
                                                                                                                acagatgtctggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTAATGTTCTCTTCAGAGAGCATGGCAGAACAGAAAAACAAAAAAGCACCtt                                 >  1:368091‑M2/31‑149 (MQ=255)
                                                                                                                       gAACCAATCGGGTCATTCATCTTATTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacg                          >  2:779069‑M2/1‑29 (MQ=255)
                                                                                                                          ggaaatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCaa                       >  2:510964‑M2/21‑149 (MQ=255)
                                                                                                                          ggaaatataggggaaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAGGTGCATTTTTGTTTttctg                       <  2:667370‑M2/129‑3 (MQ=255)
                                                                                                                             aatataggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCt                    >  1:637041‑M2/18‑149 (MQ=255)
                                                                                                                               tataggggcaaatacATTAAGCCAGCAATCGACGCTCTCAGGAGTCAGAAGACAAAAACGAGACATAACAAAGAGCATATCATTGATGTTCACTTCAGAGCGGAGGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCGGa                  >  2:487924‑M2/16‑149 (MQ=255)
                                                                                                                                  aggggcaaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGGAAAGAGCACACCATTGATGTTCACTTCAGAGAGTATGGCAGAACTGAAAAACAAAAATGCCCCTTGGTTTTTCAACCTGAGgt               >  1:16171‑M2/13‑149 (MQ=255)
                                                                                                                                       caaatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAAAAAAAAAAAAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAg          <  2:593015‑M2/142‑1 (MQ=255)
                                                                                                                                        aaagccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACAGTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGc         <  1:318126‑M2/143‑1 (MQ=255)
                                                                                                                                         aatccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCg        >  1:503999‑M2/6‑149 (MQ=255)
                                                                                                                                          atccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCga       <  1:460822‑M2/145‑1 (MQ=255)
                                                                                                                                           tccATTAAGCCAGCAATCGACGCCCACCGGAGTCAGATGACATTAACGAGACTGAGCAACAAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAAAGCACCTTGGTTTTTCAACCTGAAGTGTCAGCgag      >  2:672316‑M2/4‑149 (MQ=255)
                                                                                                                                            ccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCgaga     <  1:89872‑M2/147‑1 (MQ=255)
                                                                                                                                            ccATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCgaga     <  1:531438‑M2/147‑1 (MQ=255)
                                                                                                                                            ccATTAAGCCAGCAATCGACGCGCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCgaga     <  1:322384‑M2/147‑1 (MQ=255)
                                                                                                                                               ttaAGgagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaa  >  1:69667‑M2/1‑5 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
GTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGTA  >  NC_000913/1652112‑1652402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.