Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,143,643 T→G 100% Q242P (CAG→CCG)  rne ← endoribonuclease; RNA‑binding protein;RNA degradosome binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,143,6430TG100.0% 135.1 / ‑6.7 46Q242P (CAG→CCG) rneendoribonuclease; RNA‑binding protein;RNA degradosome binding protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base G (16/29);  minor base A (1/0);  total (17/29)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TGGAACCACCAGACGGCAGACGAACTTCACGCTGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCTTTTTTGA  >  NC_000913/1143497‑1143787
                                                                                                                                                  |                                                                                                                                                
tGGAACCACCAGACGGCAGACGAACTTCACGCTGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGa                                                                                                                                                >  1:432132/1‑149 (MQ=255)
   aaCCACCAGACGGCAGACGAACTTCACGCTGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGt                                                                                                                                             <  1:266372/149‑1 (MQ=255)
    ccccccaGACGGCAGACGAACTTCACGCTGGAATGCGGACTCGATCTTGGAGTCGTTTTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTg                                                                                                                                            <  1:108073/145‑1 (MQ=255)
              ggCAGACGAACTTCACGCTGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTCATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGAAGTGCGGACGTGCCAGTTCGAg                                                                                                                                  >  2:574814/1‑149 (MQ=255)
                cAGACGAACTTCACGCTGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCa                                                                                                                                >  1:494694/1‑149 (MQ=255)
                            aCGCTGCAAGGCGCACTCGATCTGCGACTCGATCCCGCAGTGGCTGCACAGCGGGATCACGCCGGTGTACAGTTTGATTTTGCTGCCGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTAt                                                                                                                    <  1:465153/149‑1 (MQ=255)
                              gatGGAAGGCGGACCCGATCTGTGACTCGATCTGGAAGTGGCTCAACCGCGGGCTCTCGCCGGTGCACAGTTTGATTTTGCTGCTGAAAACCGGGCGACCTAATGCAGCGAACTGCGAAAGTGCCAACCCGAGCACTTTCGGGCTGTCg                                                                                                                  >  2:763511/3‑149 (MQ=255)
                              gCTGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCAGACGTGCCAGTTCGAGCACTTTGGGGTTGTCg                                                                                                                  >  1:303837/1‑149 (MQ=255)
                              gCTGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGGGGCTGAACAGCGGGATCTGGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCGGCGATATGCGGACGTGCCAGTTCGAGCACTTGCGGGTTGTCg                                                                                                                  >  2:192893/1‑149 (MQ=255)
                                tGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGAt                                                                                                                <  1:6642/149‑1 (MQ=255)
                                tGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGAt                                                                                                                <  1:510408/149‑1 (MQ=255)
                                  gAATGCCGACCCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATaa                                                                                                              <  1:363887/149‑1 (MQ=255)
                                  gAAGGCGGACTCGTTCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATaa                                                                                                              >  1:573089/1‑149 (MQ=255)
                                      gCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGAt                                                                                                          >  1:162731/1‑149 (MQ=255)
                                                tCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGCTg                                                                                                >  2:205200/1‑149 (MQ=255)
                                                       cTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGAc                                                                                         <  1:123197/149‑1 (MQ=255)
                                                               ggTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACgtaagtaa                                                                                 <  1:726821/149‑1 (MQ=255)
                                                                   gTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCGGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGAACTcgc                                                                             >  2:115439/1‑149 (MQ=255)
                                                                      gcggAACAGCGGGATCGCGCCGGAGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCCATCAGGCGGTCGCGGATGTCCTGACGTAAGTAATCGCGGa                                                                          >  2:167881/4‑149 (MQ=255)
                                                                               cGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGGCGTAAGTAATCGCGGAATGCGCGaa                                                                 >  2:343905/1‑149 (MQ=255)
                                                                                gggATCGCGCCGTTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAAc                                                                <  2:433559/149‑1 (MQ=255)
                                                                                 ggATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATACAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACg                                                               <  1:450148/149‑1 (MQ=255)
                                                                                   aTCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGAt                                                             <  2:162731/149‑1 (MQ=255)
                                                                                         ccGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGtt                                                       <  1:458784/149‑1 (MQ=255)
                                                                                          ccgtgtACAGTTCGATCTTGCCGCTGAATTCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTACTCGCGGAATGCGCGAACGATTACGTTg                                                      <  2:155216/147‑1 (MQ=255)
                                                                                                 cAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAAGGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCt                                               <  1:515602/149‑1 (MQ=255)
                                                                                                    tttGATTTTGCTGCTGAAATCCGGGGGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAAGCGCGGACTGCGCGAACGAGTACGGTGCTCTCCtgat                                            >  1:400876/1‑149 (MQ=255)
                                                                                                    tttGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGGACGATTACGTTGCTCTCCtgat                                            >  1:196000/1‑149 (MQ=255)
                                                                                                      ttaTTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGTGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCtgatga                                          <  2:412292/147‑1 (MQ=255)
                                                                                                           ttGCGGCTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAg                                     <  2:187316/149‑1 (MQ=255)
                                                                                                            tgctgcTGAAGTCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAgg                                    <  1:604354/149‑1 (MQ=255)
                                                                                                            tgctgcTGAAATCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAgg                                    <  1:576619/149‑1 (MQ=255)
                                                                                                                   gAAACCCGGGCGCCCTAATGCAGCGAGATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACgggg                             <  2:657077/149‑1 (MQ=255)
                                                                                                                    aaaTCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTGATCGATAAGGATTTCGCCGATGTCCTGACGTAGGTAATCGCGGCCTGCGCGATCGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGc                            >  1:149903/1‑149 (MQ=255)
                                                                                                                      aTCCGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCg                          <  2:432132/149‑1 (MQ=255)
                                                                                                                        ccGGGCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCggg                        >  1:310671/1‑149 (MQ=255)
                                                                                                                           ggCGACCTAATGCAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGATTATCGATAAGGATTTCGCCGATGTCCGGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTGTCCTGACGAATCAGGAACGGGGCCGggcgg                     <  2:549861/149‑1 (MQ=255)
                                                                                                                                  tAATGCAGCGATATGCGGACGTGCCAGTTCGCGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTCCCGCGCGGATGAATCAGGAACGGGGCCGGGCGGCTTTCAg              <  1:192893/149‑1 (MQ=255)
                                                                                                                                   aaTGCAGCGATATGCGGACGTGCCAGTGCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTTACGTAAGCAATCACGGAATTCGCGAACGATCACGTCGCTCACCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGc             <  1:115439/149‑1 (MQ=255)
                                                                                                                                      gcgacGAGATGCGGGCGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGTTTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGc          <  2:761888/145‑1 (MQ=255)
                                                                                                                                      gCAGCGATATGGGGACGTGCCAGTTGGGGGACTTTCGGGGTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTAATGCGCAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGc          <  2:173936/149‑1 (MQ=255)
                                                                                                                                       cAGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCt         >  2:668153/1‑149 (MQ=255)
                                                                                                                                        aGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCtt        <  2:709740/149‑1 (MQ=255)
                                                                                                                                        aGCGATATGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCtt        <  1:719035/149‑1 (MQ=255)
                                                                                                                                        aGCGATATGCGGACGCGCCAGTTCCAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCtt        <  2:397793/149‑1 (MQ=255)
                                                                                                                                              atGCGGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATCAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCTTTTTTGa  <  1:574814/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
TGGAACCACCAGACGGCAGACGAACTTCACGCTGGAAGGCGGACTCGATCTGTGACTCGATCTGGTAGTGGCTGAACAGCGGGATCTCGCCGGTGTACAGTTTGATTTTGCTGCTGAAATCCGGGCGACCTAATGCAGCGATATGCTGACGTGCCAGTTCGAGCACTTTCGGGTTATCGATAAGGATTTCGCCGATGTCCTGACGTAAGTAATCGCGGAATGCGCGAACGATTACGTTGCTCTCCTGATGAATCAGGAACGGGGCCGGGCGGCTTTCAGCGGCTTTTTTGA  >  NC_000913/1143497‑1143787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑