Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1–insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 109 [1] [0] 109 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785021 (0.010)101 (0.990) 78/280 0.2 99.5% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

Only 100 of 112 total aligned reads displayed.

TTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1978347‑1978502
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATA  >  NC_000913/1979279‑1979426
                                                                                                                                                                                                                                                                                                                 
TTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAC                                                                                                                                                              <  2:89725/149‑1
      ATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAAT                                                                                                                                                        <  1:704184/149‑1
      ATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAAT                                                                                                                                                        <  2:422731/149‑1
      ATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAAT                                                                                                                                                        >  1:1162741/1‑149
           AATGGGTCTTTACCCTTATCCAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATA                                                                                                                                                   <  1:9447/149‑1
             TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATGACGTAACATAAATGTATAAG                                                                                                                                                 <  2:395539/149‑1
              GGGTCTTTACACTTAACTAAGATTTTTCCGAAATCGACGCAATTGTACTCGTCACTACACGCACATACAACGGAGGGTGGCTGCGACTTTCAATAATGCGTGATGGAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGT                                                                                                                                                <  2:81495/149‑1
                 TCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACTTAAATATGTAAGTCAT                                                                                                                                             >  1:1559162/1‑149
                  CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACACGTCACTACACGCACAGACAAAGGAGGGGGGCTGCGAATTTCAATAATGCGTGATGAAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGGCAT‑A                                                                                                                                           >  2:604089/1‑149
                   TTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAAGGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑AC                                                                                                                                          >  1:472175/1‑149
                    TTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGCCAT‑ACT                                                                                                                                         >  1:1344032/1‑149
                      ACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTATCATAAATGTATAAGTCAT‑ACTTT                                                                                                                                       >  2:1119685/1‑149
                       CACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTT                                                                                                                                      <  1:1643091/149‑1
                         CTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGT                                                                                                                                    <  2:2946/149‑1
                          TTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTACCATAAATGTATAAGTACT‑ACTTTTGTT                                                                                                                                   >  1:57850/1‑149
                          TTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTT                                                                                                                                   >  1:15741/1‑149
                              CTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGG                                                                                                                               <  1:1630838/149‑1
                               TAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGG                                                                                                                              >  2:1385683/1‑149
                                AAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACACCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAACACACTCAATTACGTGACATAAATGTATAAGTCATAATTTTTGTTTTGGt                                                                                                                              >  1:65863/1‑148
                                AAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTCTCAATAATCCGTGATGCAGATCAAACAAAACACTCAATTACTTAACATAAAAGTAAAAGTCAT‑ACTTCTGTTTTGGtg                                                                                                                             >  2:79070/1‑147
                                  GATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCGCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGT                                                                                                                           <  2:1011731/149‑1
                                    TTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGTTGTAT                                                                                                                         >  2:1206766/1‑149
                                      TTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTT                                                                                                                       <  1:1494128/149‑1
                                       TTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTC                                                                                                                      >  1:1035821/1‑149
                                        TCCTAAATCTACGCACCTGTACGCGTCACTACACGCCCATACAACGGAGTGGCGCTGCGATTTTCAATAATGCGTGATGCAGCTCACACAACACTCTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCA                                                                                                                     <  2:1710480/149‑1
                                          CTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAAT                                                                                                                   <  1:1015292/149‑1
                                          CTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAAT                                                                                                                   <  2:1687226/149‑1
                                           TAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATC                                                                                                                  >  1:318568/1‑149
                                              ATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGT                                                                                                               >  1:1304052/1‑149
                                              ATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGGTTTGGGTGTATTTCAATGTGT                                                                                                               >  1:1018574/1‑149
                                                 GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAA                                                                                                            >  1:607503/1‑149
                                                 GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAA                                                                                                            >  1:1770335/1‑149
                                                 GACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAACACACAAAACACTCAATTACTTAACATAAATGTGTAAGTCAT‑ACTTTTGTTTTGGTTGTATTTGCATCTGGTAA                                                                                                            >  2:370785/1‑149
                                                  ACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACAGTCAATTACTTAACATAAATGTATAACTCAT‑ACTCTTGTTTTGGGTGTATTTCAATCTGTTAAA                                                                                                           <  1:1160239/149‑1
                                                    GCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA                                                                                                         <  1:1420920/149‑1
                                                    GCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAA                                                                                                         <  2:1500592/149‑1
                                                      AACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGa                                                                                                       >  1:1683805/1‑148
                                                      AACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTATTAAAAAGT                                                                                                       >  2:1749120/1‑149
                                                       ACTGTACCCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTT                                                                                                      <  1:163351/149‑1
                                                           TACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTC                                                                                                  >  1:1649391/1‑149
                                                              TCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCT                                                                                               <  2:943859/149‑1
                                                              TCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTGTAAAAGTTTTTCGCT                                                                                               >  1:449491/1‑149
                                                                 TCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACG                                                                                            >  2:230823/1‑149
                                                                 TCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACG                                                                                            >  1:48301/1‑149
                                                                 TCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACG                                                                                            >  2:1498279/1‑149
                                                                  CACTACACGCACATACATCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGC                                                                                           <  1:919940/149‑1
                                                                  CACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGC                                                                                           <  2:1463203/149‑1
                                                                    CTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCCCACAAAACACTCAATTACTTAACATAAAGGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTA                                                                                         <  1:788587/149‑1
                                                                    CTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTA                                                                                         <  1:918707/149‑1
                                                                      ACACGCACATACAACGGAGGGGGGCGGCTATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACGTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGC                                                                                       <  1:811950/149‑1
                                                                       CACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCA                                                                                      >  1:1583939/1‑149
                                                                        ACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAA                                                                                     >  2:1337020/1‑149
                                                                                ACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAT                                                                             >  1:1342830/1‑149
                                                                                    CGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTACTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAA                                                                         <  2:405118/149‑1
                                                                                    CGGAGGGGCGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAA                                                                         <  1:1632562/149‑1
                                                                                      GAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAATTGAAACg                                                                       >  1:1729653/1‑148
                                                                                       gGGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAG                                                                      <  1:16533/148‑1
                                                                                        GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGGGTATTTCAATCTGTTAAAAAGTTCTTCGCTACGCTAGCAAGCAAAAATGAAACAGG                                                                     >  1:1645316/1‑149
                                                                                         GGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGA                                                                    <  1:1265542/149‑1
                                                                                          GGGGCCGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                                                                   <  1:451297/149‑1
                                                                                           GGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT                                                                  >  1:779914/1‑149
                                                                                              CTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT                                                               <  2:1642411/149‑1
                                                                                              CTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT                                                               >  1:1071405/1‑149
                                                                                                  GATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAA                                                           >  1:1356288/1‑149
                                                                                                     TTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG                                                        <  2:1405661/149‑1
                                                                                                       TCAATAATGCGTGATGCAGATCACACAAAACACTCATTTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG                                                      <  1:959726/149‑1
                                                                                                       TCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG                                                      >  1:598854/1‑149
                                                                                                       TCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG                                                      <  2:477371/149‑1
                                                                                                         AATAATGCGTGATTCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT                                                    <  1:1346146/149‑1
                                                                                                         AATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT                                                    >  1:723529/1‑149
                                                                                                             ATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGAGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTG                                                >  1:637167/1‑149
                                                                                                               GCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCG                                              >  2:182083/1‑149
                                                                                                                 GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCA                                            <  1:1521007/149‑1
                                                                                                                   GATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACA                                          <  2:281584/149‑1
                                                                                                                    ATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAG                                         >  1:384292/1‑149
                                                                                                                      GCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGAGATGTTGCGCACAGTC                                       >  1:1777180/1‑149
                                                                                                                         GATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAA                                    <  1:559131/149‑1
                                                                                                                           TCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAGTCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATAGGATGTTGCGCACAGTCAACAT                                  >  2:1039274/1‑149
                                                                                                                           TCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAT                                  >  1:244337/1‑149
                                                                                                                             ACACAAAACACTCAATGACTTAACATAAATGTATAAGTCAG‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAA                                <  2:1202158/149‑1
                                                                                                                              CACAAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAAC                               >  2:1670357/1‑149
                                                                                                                                 AAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGGGCACAGTCAACATAAATCA                            >  2:878034/1‑149
                                                                                                                                 AAAACACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCA                            >  1:515824/1‑149
                                                                                                                                      ACTCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTA                       >  2:1370822/1‑149
                                                                                                                                        TCAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAA                     >  1:572024/1‑149
                                                                                                                                         CAATTACTTAACCGAAAGGTATAAGTCAT‑ACTTTTGGTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAATATAACTCACCGTAAAT                    <  1:1116128/149‑1
                                                                                                                                         CAATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAAT                    <  1:422612/149‑1
                                                                                                                                          AATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATA                   >  1:77955/1‑149
                                                                                                                                          AATTACTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATA                   >  1:10754/1‑149
                                                                                                                                               CTTAACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTCTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAACTAACTCACCGTAAAATATCAT              >  2:578062/1‑149
                                                                                                                                                  AACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG           <  2:1649391/149‑1
                                                                                                                                                  AACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG           <  1:551398/149‑1
                                                                                                                                                  AACATAAATGTATAAGTAAT‑ACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG           <  2:1162741/149‑1
                                                                                                                                                   ACATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC          <  1:1337020/149‑1
                                                                                                                                                     ATAAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTACTA        >  2:627375/1‑149
                                                                                                                                                       AAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATA      >  1:203161/1‑149
                                                                                                                                                       AAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATA      >  1:1063695/1‑149
                                                                                                                                                       AAATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAAAAAGCAAAAAGGAAACAGGAATAATCGAAATGGGATGTTGCGCAAAGGCAAAAAAACTCACCGTAAAAAATCATCTGCTATA      >  1:58759/1‑149
                                                                                                                                                        AATGTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAACAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAA     <  2:1356288/149‑1
                                                                                                                                                           GTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATA  >  1:403212/1‑149
                                                                                                                                                                                                                                                                                                                 
TTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1978347‑1978502
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cataaatgTATAAGTCAT‑ACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATA  >  NC_000913/1979279‑1979426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.