New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2007656	110 (1.020)	5 (0.050)	5/280	15.8	4.5%	intergenic (+13/+21)	amyA/yedD	cytoplasmic alpha‑amylase/lipoprotein
	?	NC_000913	= 2007661	110 (1.080)					intergenic (+18/+16)	amyA/yedD	cytoplasmic alpha‑amylase/lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGAGAGAATTACGGCAATAAAACCTGGCGTGATTTTCTGGGGAACCGGCAAGAGAGAGTAGTGACCGACGAAAACGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGTCAGCGTGTGGGTTATCGAAGAGGTGATTTAAATTCATCCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2007502‑2007656 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccccggcTTGCCGCCGGGGATGAATTTAAATCACCTCTTCGATAACCCACACGCTGACGCTGCCGCCGTTGCAAAAGAAGGTTGCTTCGCCGTTTTCGTCGGTCACTACTCTCTCTTGCCGGTTCCCCAGAAAATCACGCCAGGTTTTATTGCC  <  NC_000913/2007661‑2007515                                                                                                                                                                                                                                                                                                                GGGAGAGAATTACGGCAATAAAACCTGGCGTGATTTTCTGGGGAACCGGCAAGAGAGAGTAGTGACCGACGAAAACGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGTCAGCGTGTGGGTTATCGAAGAGGTGATTTAAATTCATC                                                                                                                                                           <  2:999273/149‑1   GAGAGAATTACGGCAATAAAACCTGGCGTGATTTTCTGGGGAACCGGCAAGAGAGAGTAGTGACCGACGAAAACGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGTCAGCGTGTGGGTGATCGAAGAGGTGATTTAAATTCATCCC                                                                                                                                                         >  1:1243071/1‑149        AATTACGGCAATAAAACCTGGCGTGATTTTCTGGGGAACCGGCAAGAGAGAGTAGTGACCGACGAAAACGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGTCAGCGTGTGGGTTATCGAAGAGGTGCTTTAAATTCATCCCCGGgg                                                                                                                                                    >  2:95793/1‑147                       ACCTGGCGTGATTTTCTGGGGAACCGGCAAGAGAGAGTAGTGACCGACGAAAACGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGACAGCGTGTGGGTTATCGAAGAGGTGATTTAAATTCATCCCCGGCTTGCCGCCGGGGATGA                                                                                                                                     <  2:1710091/149‑1                        CCTGGGGTGATTGTCTGGGGAGCCGGCAAGAGAGAGTAGTGACCGACGAAAACGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGTCAGCGTGTGGGTTATCGACGAGTTGATTTAAATTCATCCCCGGCTTGCCGCCGGGGATGAA                                                                                                                                    <  2:1712520/149‑1                         cgGGCGTGATTTTCTGGGGAACCGGCAAGAGAGAGTAGTGACCGACGAAAACGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGTCAGCGTGGGGGTTATCGAAGAGGTGATTTAAATTCATCCCCGGCTTGCCGCCGGGGATGAAT                                                                                                                                   <  1:867308/147‑1                                          cGAACCGGCAAGTGAGACGAGGGACCGACGAAATCGGCGAAGCAACCTTCTTTTGCAACGGAGGCAGCGTCAGCGTGTGGGTTATCGAAGAGGTGATTTAAATTCATCCCCGGCTTGCCGCCGGGGATGAATTTAAATCACCTCTTCGA                                                                                                                  <  2:970451/148‑1                                                   AAGAGAGAGTAGTGACCGACGAAAGCGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGTCAGCGTGTGGGTTATCGAAGAGGTGATTTAAATTCATCCCCGGCTTGCCGCCGGGGATGAATTTAAATCACCTCTTCGATAACCCACA                                                                                                         <  2:223068/149‑1                                                                                                                                                       CCGGCTTGCCGCCGGGGATGAATTTAAATCACCTCTTCGATAACCCACACGCTGACGCTGCCGCCGTTGCAAAAGAAGGTTGCTTCGCCGTTTTCGTCGGTCACTACTCTCTCTTGCAGGTTCCCCAGAAAACCAAACCAGGTTTTATT     >  1:1093594/1‑149                                                                                                                                                          GCTTGCCGCCGGGGATGAATTTAAATCACCTCTTCGATAACCCACACGCTGACGCTGCCGCCGTTGCAAAAGAAGGTTGCTTCGCCGTTTTCGTCGGTCACTACTCTCTCTTGCCGGTTCCCCAGAAAATCACGCCAGGTTTTATTGCC  <  1:1061256/149‑1                                                                                                                                                                                                                                                                                                                GGGAGAGAATTACGGCAATAAAACCTGGCGTGATTTTCTGGGGAACCGGCAAGAGAGAGTAGTGACCGACGAAAACGGCGAAGCAACCTTCTTTTGCAACGGCGGCAGCGTCAGCGTGTGGGTTATCGAAGAGGTGATTTAAATTCATCCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2007502‑2007656 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccccggcTTGCCGCCGGGGATGAATTTAAATCACCTCTTCGATAACCCACACGCTGACGCTGCCGCCGTTGCAAAAGAAGGTTGCTTCGCCGTTTTCGTCGGTCACTACTCTCTCTTGCCGGTTCCCCAGAAAATCACGCCAGGTTTTATTGCC  <  NC_000913/2007661‑2007515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.