New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 404068269 (1.340)8 (0.160) 3/272 NT 10.9% intergenic (+47/+223) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
?NC_000913 = 4213161 63 (1.250)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein

TGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG  >  NC_000913/4040537‑4040830
                                                                                                                                                 |                                                                                                                                                    
tggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCGTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAGGACTGGGCCTTTCGTTTTATCtg                                                                                                                                                   >  2:205939/1‑149 (MQ=21)
tggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtg                                                                                                                                                   >  2:651085/1‑149 (MQ=35)
 ggtCCCAACTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCAGGCGAGAGTCGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgt                                                                                                                                                  <  1:560359/149‑1 (MQ=255)
  gtCCCACCTGCCCCCTTGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgtt                                                                                                                                                 <  2:291180/149‑1 (MQ=25)
  ggcccacCTGACCCCAGGCCGAACTCAGAAGTGAAGGGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgat                                                                                                                                                 <  2:149046‑M1/147‑6 (MQ=255)
    cccACCTGACCCGATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGTTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTAAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttgt                                                                                                                                               <  2:569878/149‑1 (MQ=255)
    cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttgt                                                                                                                                               <  1:534739/149‑1 (MQ=34)
     ccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTgttgtt                                                                                                                                              >  1:164546/1‑149 (MQ=35)
          tGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCCCAGTCTTCCGACTGAGCCTTTCGTTTTATttgatgcctggca                                                                                                                                         <  1:441025‑M1/149‑14 (MQ=255)
            aCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGt                                                                                                                                       >  2:720040/1‑149 (MQ=35)
             ccccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGGTTGATCTGttgtttgtttgtg                                                                                                                                      <  2:428175/149‑6 (MQ=255)
                    ccGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGctc                                                                                                                               >  1:819644/1‑149 (MQ=35)
                      gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCAGTTGTTGGTCGGTGAACGCtctc                                                                                                                             >  2:561351/1‑149 (MQ=25)
                       aaCTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCCTCAAATAAAACGACAGGCTCCGCCGGAAGACTGGGCCTTTCGGTTTATCTGTTGTTTGTCGGTGAACGCCCTcc                                                                                                                            >  2:99572/1‑149 (MQ=11)
                          tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGGCTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGa                                                                                                                         >  1:709342/1‑149 (MQ=25)
                          tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGa                                                                                                                         >  2:499389/1‑149 (MQ=35)
                          tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGa                                                                                                                         <  1:804514/149‑1 (MQ=35)
                          tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGa                                                                                                                         <  1:651085/149‑1 (MQ=35)
                            aGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGt                                                                                                                       <  1:58747/149‑1 (MQ=35)
                             gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTa                                                                                                                      >  1:420060/1‑149 (MQ=35)
                             gAAGCGAACCGCCGTAGCGCCGATGGTAGTGTGGGGGCTCATCAGGCGAGAGTAGGGCACTGCCGGGCATCAAATAAAGCGAAAGGCTCAGACGGAAGACTGGGCCTTACGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTa                                                                                                                      <  2:664359/149‑1 (MQ=11)
                              aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAg                                                                                                                     >  1:883368/1‑149 (MQ=35)
                                gTGAAACGCCGTAGCGCCGATCGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTAGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGa                                                                                                                   <  1:627773/149‑1 (MQ=21)
                                 tGAACCGGCGTAGCGTCGATGTTACTGTGGGTTCTCCTGACGCGACAGTAGGTAACTGCCAGGGATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGAc                                                                                                                  <  2:371034/149‑1 (MQ=11)
                                 tGAAACGCCGTGGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGAc                                                                                                                  >  1:18427/1‑149 (MQ=25)
                                 tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGAGGAAGGCTCTCCTGCGTGGGAc                                                                                                                  >  1:433779/1‑149 (MQ=11)
                                 tGAAACGCCGTAGCGCCGATGGTAGTGGGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGAc                                                                                                                  <  1:206214/149‑1 (MQ=21)
                                    aaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACaga                                                                                                               >  2:196661/1‑147 (MQ=25)
                                     cggCCGTAGTGCCGATGTTAGTGTGGGGTCTCCTCATGCGATAGTAGGGAACTGCCATGCATCAAATAATACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAt                                                                                                              <  2:793244/147‑1 (MQ=11)
                                         gggggcgcCGATGGTAGTGGGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgc                                                                                                          <  1:422223/145‑1 (MQ=25)
                                          gTAGCGCCGGTGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgcc                                                                                                         <  2:815600/149‑1 (MQ=21)
                                           tAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgccg                                                                                                        >  2:460342/1‑149 (MQ=35)
                                           tAGCGCCGACGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTGTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgccg                                                                                                        <  2:284480/149‑1 (MQ=21)
                                                   aTGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGGGCGGa                                                                                                >  1:31722/1‑149 (MQ=25)
                                                      gTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAttt                                                                                             <  2:793037/149‑1 (MQ=35)
                                                            tgGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGt                                                                                       >  1:8446/1‑149 (MQ=35)
                                                            tgGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCCCAGTCGGCAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGt                                                                                       >  1:852202/1‑149 (MQ=25)
                                                             ggggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGCTTTGAACGtt                                                                                      >  1:258045/1‑149 (MQ=25)
                                                              gggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGGTTTGAACGTTg                                                                                     >  1:458736/1‑149 (MQ=25)
                                                              gggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGAAGGACAAATCCGCCGGGAGCGGATTTGAACGTTg                                                                                     >  1:737702/1‑149 (MQ=25)
                                                               ggcctcctcACGCGGGAGTAGGGAACTGCCAGGCATCAAATAAACCGAAAGGCTCAGTCAGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGc                                                                                    <  1:452468/146‑1 (MQ=11)
                                                                 tctcCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGa                                                                                  <  1:780168/149‑1 (MQ=34)
                                                                 tctcCTCATGCGAGAGTAGGGAACCGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCAGTGAACGATCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGa                                                                                  >  1:674113/1‑149 (MQ=255)
                                                                 tctcCTCATGCGAGAGTAGGGAACAGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTCAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGa                                                                                  >  1:674452/1‑149 (MQ=25)
                                                                  ctcctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGGGCGGATTTGAACGTTGCGaa                                                                                 >  1:49941/1‑149 (MQ=25)
                                                                        aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACg                                                                           >  2:786843/1‑149 (MQ=32)
                                                                          gCGAGAGTAGGGAACTGCCAGGCAACAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCGTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCATGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGc                                                                         >  2:619515/1‑149 (MQ=12)
                                                                           cGAGAGTAGGGAACTGCCAGGCATCAAATCAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTGGTTTTATCTGTTGTTTGTCGGTGAGCGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGcc                                                                        >  1:592347/1‑149 (MQ=12)
                                                                               gatAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGa                                                                    <  2:127267/147‑1 (MQ=17)
                                                                                 tAGGGAACTGGCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAgg                                                                  <  1:254600/149‑1 (MQ=17)
                                                                                  aGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAggg                                                                 >  1:184198/1‑149 (MQ=32)
                                                                                    ggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTg                                                               >  2:310023/1‑149 (MQ=32)
                                                                                    ggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAAACTGGGCCTTTCGTGTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACCAATCCGCCGGGCGCGGCTTTGAACGTTGCGAAGAAACGGCCCGGAgggag                                                               >  1:94931/1‑147 (MQ=11)
                                                                                         tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGGGGGTGGCggg                                                          >  1:6783/1‑149 (MQ=17)
                                                                                          gCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGc                                                         <  1:876831/149‑1 (MQ=32)
                                                                                           ccAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTAGCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCa                                                        <  2:292759/149‑1 (MQ=17)
                                                                                             aGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTATTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCCgg                                                      >  2:828302/1‑149 (MQ=17)
                                                                                              ggCATCACATAAAATGAAAGGCTCAGTCGGAAGACTGGGCCGTTCGTTGTGACGGTTGTGTGTCGGTGAACGCTCTCCTGAGTAGGCCAAATCCGCCGGGAGCGGATTTGAACGTTGCGTAGCAACGGCCCGTAGGGTGGCGGGCAGGa                                                     <  1:574240/149‑1 (MQ=11)
                                                                                                 aTCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGACTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgc                                                  >  2:793099/1‑149 (MQ=17)
                                                                                                  tCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCAGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGACAGGATTGGAACGTGTCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgcc                                                 >  1:299338/1‑149 (MQ=11)
                                                                                                   cAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgccc                                                <  1:720040/149‑1 (MQ=32)
                                                                                                    aaaTAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgcccg                                               <  1:469326/149‑1 (MQ=32)
                                                                                                    aaaTAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGAAggcccg                                               >  2:847714/1‑149 (MQ=17)
                                                                                                    aaaTAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTCCGAAGCAACGGCACGGCGGGGGGCGGGCAGGCcgcccg                                               >  2:848336/1‑149 (MQ=11)
                                                                                                         aaaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATa                                          >  2:481518/1‑149 (MQ=32)
                                                                                                         aaaCGAAAGGCTCAGTCGGAAGACTGGGCCTGTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGCGCAGGACGCCCGCCATa                                          <  2:861136/149‑1 (MQ=12)
                                                                                                          aaCGAAGGGCTCAGTCGGAAGACTGGGCCTGTCGTTTTATttgttgcctggaagtaccgtactctcgcatgagcagacccgacactaccagcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggggccaccgcgct                                         >  2:808754‑M1/1‑40 (MQ=255)
                                                                                                          aaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGGCGCCCGCCATaa                                         >  1:719974/1‑149 (MQ=17)
                                                                                                              aaaGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactg                                     >  1:884248‑M1/1‑36 (MQ=255)
                                                                                                              aaaGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactg                                     >  2:815123‑M1/1‑36 (MQ=255)
                                                                                                                aGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGcc                                   >  1:358643/1‑149 (MQ=17)
                                                                                                                  gCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAGTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAg                                 >  2:732413/1‑149 (MQ=17)
                                                                                                                   cccAGTCGGAAGACTGGCCCTTTCGTTTTATCCGTTGTTTGTCGGTGAACGCCCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAgg                                <  2:448953/147‑1 (MQ=12)
                                                                                                                    tCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGCTTTGCACCAGCCATAGCAACGGCCCGGAGGGTGTCGGGCAGGACGCCCGCCATAAACTGCCAGGc                               >  1:438363/1‑149 (MQ=11)
                                                                                                                      aGTCGGAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatgaggagaccccaacctcccctccaccctacggcgtttcacttctgagttcggcatggggtcaggtgggccacccgcgctactgccgccaga                             >  2:328498‑M1/1‑28 (MQ=255)
                                                                                                                      aGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCAt                             <  2:881257/149‑1 (MQ=32)
                                                                                                                       ggcGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTAGGTGAACGCTCTCCTGAGTAGGACAAAACCGCCGGGAGCGGATTTGAACGGTGCGAAGCAACGGCCAGGAGGGTGGCGGGCAGGACGCCGGCCATACACTGCCAGGCaac                            >  2:689941/3‑147 (MQ=11)
                                                                                                                        gcGGAAGCCTGGGCCTTTCGTTTTATCTGTTGTGTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAGGCAACGGCCCGGAGGGTGGCGGGCAGGACGCGCGCCATAAACTGCCAGGCATCa                           <  2:333612/148‑1 (MQ=255)
                                                                                                                         cGGAAGACTGGGCCTTTCGTTTTATCTGTGGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCaa                          <  1:481287/149‑1 (MQ=17)
                                                                                                                                     ccTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcaaattctgttttat              <  1:142200‑M1/149‑137 (MQ=255)
                                                                                                                                        ttCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcaaattctgttttatcag           <  2:651447‑M1/149‑140 (MQ=255)
                                                                                                                                         tCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcatgtgggaccaccgcgctactgccgccaggcaaattctgttttatcaga          >  2:171469‑M1/1‑9 (MQ=255)
                                                                                                                                           gTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcaaattctgttttatcagacc        >  2:715381‑M1/1‑7 (MQ=255)
                                                                                                                                                aTttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcaaattctgttttatcagaccgcttc   <  1:398558‑M1/149‑148 (MQ=255)
                                                                                                                                                 tttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggaccaccgcgctactgccgccaggcaaattctgttttatcagaccgcttct  <  1:156331‑M1/149‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
TGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACG  >  NC_000913/4040537‑4040830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.