New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3110532 =	51 (0.990)	3 (0.060)	3/254	NT	6.6%	intergenic (+93/+56)	pheV/yghD	tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein
	?	NC_000913	3110563 =	38 (0.800)					intergenic (+124/+25)	pheV/yghD	tRNA‑Phe/putative membrane‑anchored secretion pathway M‑type protein

TTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCA  >  NC_000913/3110417‑3110709                                                                                                                                                     |                                                                                                                                                   ttCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTa                                                                                                                                                  >  1:232899/1‑149 (MQ=255) ttCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACACGCCCACAAGGCGGGTTTTTGCTTTTGCATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTa                                                                                                                                                  <  2:310355/149‑1 (MQ=255)  ttgATTCCGAGTCCGGGCACCACTAATCCTTAAGAACCCGCCCACAAGGCGGGGTTTTGCTTTTGGATCTGACAATAACCTTAACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAt                                                                                                                                                 <  2:805621/147‑1 (MQ=255)  tCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAt                                                                                                                                                 <  2:145999/149‑1 (MQ=255)  tCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAt                                                                                                                                                 <  1:516049/149‑1 (MQ=255)   cGATTCCGACTCCGGGCACCACTAATTCTTAAGCACCCGCCCACAAGGCGGGTTTTTGCTTTTGCATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAATTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAtt                                                                                                                                                <  1:125347/149‑1 (MQ=255)      ttCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTGGCTTATAAAGTCTGGGGGAATTACTCTGG‑CCA‑CGTGAACGAGAGTAATTTTATTGat                                                                                                                                             >  1:51530/1‑149 (MQ=255)            gTCCGGGCACCACTCATTCTGAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTATGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAAt                                                                                                                                       <  1:628890/149‑1 (MQ=255)             gggtgacacaaattgatgtcagtgctgctgagaagcctgggatggtgaatgtgcagcggctggagtttggacgggggtaaagtatcaggagattaatatcaataaaattactctcgccacgttaacgagagtaattTTATTGATATTaa                                                                                                                                        <  2:807032‑M2/13‑1 (MQ=255)                   caccacTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGa                                                                                                                                <  1:491448/149‑1 (MQ=255)                   caccacTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTGTGCTTTTGGATCTGACAATAACCATCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGa                                                                                                                                <  2:159532/149‑1 (MQ=255)                        cTAATTCATAAGAACCGGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGCGAGTAATTTCATTGATATTAATCTCCTGATACtt                                                                                                                           <  1:462684/149‑1 (MQ=255)                            atgtcggggctgctgaggaggttgtgatggtgaatgtgcagcggctggagtttggacgggggtaaagtatcaggagattaatatcaataaaattactctcgccacgttaacgagagtaattTTATTGATATTAATCTCCTGATACTTTa                                                                                                                         <  2:456500‑M2/28‑1 (MQ=255)                                 aaGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGt                                                                                                                  <  2:488795/149‑1 (MQ=255)                                     aCCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGGAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCACCTGATACTTTACCCCCGTCCaa                                                                                                              >  2:353492/1‑149 (MQ=255)                                          cccACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACTCCCGTCCAAACTcc                                                                                                         >  1:744080/1‑149 (MQ=255)                                            cacaAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAg                                                                                                       >  1:723902/1‑149 (MQ=255)                                             acaAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCACACTCCAGc                                                                                                      >  1:24823/1‑149 (MQ=255)                                                      gTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGcaca                                                                                             >  2:115453/1‑149 (MQ=255)                                                       tttttGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACAt                                                                                            <  1:741038/149‑1 (MQ=255)                                                          ttGCGTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAACTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTAATGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCa                                                                                         <  2:597414/149‑1 (MQ=255)                                                           tGCTTGTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAc                                                                                        <  1:462110/149‑1 (MQ=255)                                                           gccTTTTCGATCTGACTATAACCTTCACGAAAAAAATTAGCTTATAATGCCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAc                                                                                        <  1:172422/147‑1 (MQ=255)                                                            gCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAcc                                                                                       >  2:738179/1‑149 (MQ=255)                                                            gCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCAcc                                                                                       >  1:528880/1‑149 (MQ=255)                                                               tttGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCTCCATc                                                                                    <  2:312710/149‑1 (MQ=255)                                                                ttGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGAGCATTAATCCCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATcc                                                                                   >  1:627589/1‑149 (MQ=255)                                                                    agcTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAgg                                                                               <  2:616176/147‑1 (MQ=255)                                                                    aTCTGACAACACCCTTCAGTAAAAAAATTAGTTTATAAAGTCCGGGGAAATTACTCTCC‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTACTCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAgg                                                                               <  2:163854/149‑1 (MQ=255)                                                                           aaTAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTCCTca                                                                        >  2:567447/1‑149 (MQ=255)                                                                           aaTAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAAAGAGAGTAGTTTTATTGTGATGACTCTCCTGCTACTATACCCCCCTCCAAACTCCACCACCTCCCACTTCACCATCCCAGGCCTCCca                                                                        >  2:598009/1‑149 (MQ=255)                                                                              aaCCTTCACTAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAACCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTcagca                                                                     <  2:136991/149‑1 (MQ=255)                                                                                 cTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAgcagca                                                                  >  2:837114/1‑149 (MQ=255)                                                                                  ttCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATGTCCTGATACTTGACCCCCGTCCAAACCCCAGCCGCTGCACATTCACCATCCCAGGCTTCTTGGCAGCAc                                                                 >  2:27903/1‑149 (MQ=255)                                                                                    cACGACGAAGATTAGCTTATAAAGTCTGGGGGAATTGCTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGTTATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTg                                                               <  2:76704/149‑1 (MQ=255)                                                                                    accGAAAAAAATGAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTg                                                               <  1:723099/147‑1 (MQ=255)                                                                                      cGAAAAAAATTAGCATATAAAGTCGTGGGGAATGACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGCTACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTTACCATCCCAGGCTTCTCAGCAGCACTGAc                                                             <  1:557517/149‑1 (MQ=255)                                                                                        taaagtatcaggagattaatatcaataaAATTACTCTCGTTAA‑CGTGG‑CGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCACAACCTCCTCAGCAGCCCCGACAt                                                           <  2:456500‑M1/121‑1 (MQ=255)                                                                                         aaaaaaTTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGGGAGTAATTTTATTGATATTAGTCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTAACCATCCCAGGCTTCTCTGCAGCACTGACATc                                                          >  2:281605/1‑149 (MQ=255)                                                                                             aaTTAGCTTATAAAGTATGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAAtt                                                      <  2:144463/149‑1 (MQ=255)                                                                                               ttAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtg                                                    <  2:581372/149‑1 (MQ=255)                                                                                                tAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtgt                                                   <  2:528880/149‑1 (MQ=255)                                                                                                tAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTtgt                                                   <  1:738179/149‑1 (MQ=255)                                                                                                     tataAAGTCTGGGGGAATTACTCTAG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATATGTGTCAc                                              >  1:536683/1‑149 (MQ=255)                                                                                                       ttaatatcaataaAATTACTCTCG‑TTAACGTGG‑CGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCAccc                                            <  2:807032‑M1/136‑1 (MQ=255)                                                                                                       taAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCAAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCAccc                                            >  1:226218/1‑149 (MQ=255)                                                                                                         aaGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGCAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGCCCAAACTCCAGCCGCTGCCCATTCCCCCTCCCAGGCTTCTCAGCAGCACTGACACCAAATTTAGCCACCCGc                                          >  1:62793/1‑149 (MQ=255)                                                                                                                            TCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCa                       <  2:711615‑M1/149‑1 (MQ=255)                                                                                                                                gttaacgtggcgagagtaattTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGt                     <  1:456500‑M2/128‑1 (MQ=255)                                                                                                                                    cGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTGTTCATCCAGTGCGt                 >  2:338057/1‑149 (MQ=255)                                                                                                                                     gTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGtt                <  1:601302/149‑1 (MQ=255)                                                                                                                                     gTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGtt                <  1:601552/149‑1 (MQ=255)                                                                                                                                      ttAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGttt               >  1:640117/1‑149 (MQ=255)                                                                                                                                         aCGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAAc            >  1:535339/1‑149 (MQ=255)                                                                                                                                                 aattTTATTGATATTAATCTCCTGGTGCGCTACCCCCTTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTcag    <  1:122621‑M2/145‑1 (MQ=255)                                                                                                                                                   ttTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCCCCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTcagca  <  1:235417‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCG‑CCA‑CGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCA  >  NC_000913/3110417‑3110709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.