BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4229412	NA (NA)	6 (0.090) +TTGTGCGCCAACTGCCGGATGCGGCGTGAACGCCTTATCCG	5/212	10.7	6.9%	noncoding (38/70 nt)	REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	4614337 =	113 (1.210)	6 (0.090) +TTGTGCGCCAACTGCCGGATGCGGCGTGAACGCCTTATCCG	5/212	10.7	6.9%	noncoding (80/388 nt)	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 104 total aligned reads displayed.

TGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCACTGTGATCCA  >  NC_000913/4229267‑4229559

tGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTa                                                                                                                                                   >  2:243617/1‑149 (MQ=255)

tGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTa                                                                                                                                                   >  1:1247626/1‑149 (MQ=255)

 gggAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                                                                                  <  1:1439688/149‑1 (MQ=255)

  ggAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATg                                                                                                                                                 >  1:15892/1‑149 (MQ=255)

     gaTATGCAGCGCCTGGACGCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGAGGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAAc                                                                                                                                              <  1:761211/149‑1 (MQ=255)

     gaTATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAAc                                                                                                                                              <  2:437550/149‑1 (MQ=255)

        atGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAg                                                                                                                                           >  2:292587/1‑149 (MQ=255)

        atGCAGCGCCTGAACGCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAg                                                                                                                                           <  2:1461060/149‑1 (MQ=255)

               ggcTGACCTCGCTGTTTTGTTCGGTGGCTCACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGATCGTTAGTTTTCTTTAGCCGGCTGGAATGTTGTAGTGCGTCAAGCGTCGCATGTGCTTCTATGAACAAGATGCCgg                                                                                                                                    <  2:713662/147‑1 (MQ=255)

               gcCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGGCTGATAAGACGCGTCAAGCGAAACGTCAGACACGATGAACAAGATGCCgg                                                                                                                                    >  2:1410443/1‑149 (MQ=255)

                ccTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGa                                                                                                                                   >  2:823549/1‑149 (MQ=255)

                  tGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATACGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGaac                                                                                                                                 >  1:1450801/1‑147 (MQ=255)

                  tGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTCTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCTTCAGGCACTATGAACAAGATGCCGGAT‑c                                                                                                                                <  1:938577/149‑1 (MQ=255)

                          cTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACGATGAACAAGATGCCGGAT‑CATGCATcc                                                                                                                        >  2:1471575/1‑149 (MQ=255)

                          cTGTTTTGTTCGGTGGCTTACAGTGGGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTACGAACAAGATGCCGGAA‑CATGCATcc                                                                                                                        >  2:1054161/1‑149 (MQ=255)

                            gTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCgg                                                                                                                      <  1:893339/149‑1 (MQ=255)

                             ttttGTTCTGTGGCTTACTGTGTGCGTGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATG‑ATCCGGc                                                                                                                     <  2:442784/149‑1 (MQ=37)

                             ttttGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGc                                                                                                                     >  2:461464/1‑149 (MQ=255)

                               ttGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCaa                                                                                                                   <  2:1065521/149‑1 (MQ=255)

                               ttGTTCGGTGGCCTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAAGAACAAGATGCCGGAT‑CATGCATCCGCCaa                                                                                                                   >  1:427735/1‑149 (MQ=255)

                               ttGTTCGATGGCTTACAGTGTGCGGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCaa                                                                                                                   >  2:1059686/1‑149 (MQ=255)

                                tGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATG‑ATCCGGCatc                                                                                                                  <  1:556331/149‑3 (MQ=255)

                                tGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATG‑ATCCGGCatc                                                                                                                  <  1:900678/149‑3 (MQ=255)

                                 ggtCGGGGGGTTACAGTGTGCTGGAACAGGCGCATGAAGACGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCCAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAAtt                                                                                                                 <  1:790740/147‑1 (MQ=38)

                                   tCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCGCTATGAACAAGATGCCGGAT‑CATGCATCCGGCGATTcg                                                                                                               >  1:430972/1‑148 (MQ=255)

                                   tCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCa                                                                                                               <  1:985659/149‑1 (MQ=255)

                                     ggTGGCTTACAGTGGTCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACt                                                                                                             <  2:366660/149‑1 (MQ=255)

                                             aCAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACg                                                                                                     <  1:1176785/149‑1 (MQ=255)

                                              cAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACgg                                                                                                    <  2:352197/149‑1 (MQ=255)

                                              cAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAC‑CATGCATCCGGCAATTCACTTAAAAACgg                                                                                                    <  1:947497/149‑1 (MQ=255)

                                               aGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGt                                                                                                   <  2:1389089/149‑1 (MQ=255)

                                                 tgtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTGACTTAAAAACGGTGa                                                                                                 >  1:112221/1‑149 (MQ=255)

                                                  gtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAc                                                                                                >  2:262976/1‑149 (MQ=255)

                                                   tgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGAcc                                                                                               >  2:483168/1‑149 (MQ=255)

                                                     cTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATAGTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCACCCGGCAATTCACTTAAAAACGGTGACCAg                                                                                             <  1:1095812/149‑1 (MQ=255)

                                                      tGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGCT‑CATGCATCCGGCAATCCCCTTAAAAACGGTGACCAGc                                                                                            >  2:80584/1‑149 (MQ=255)

                                                        gAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGGGACCAGCtt                                                                                          >  1:920333/1‑149 (MQ=255)

                                                            aGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGACGCATCAGGCACTCTGAAAAAGTGTCCGTAT‑TATGCATCCGGCAATCCACTTAAAAACGGTGACCAGCTTCCAg                                                                                      >  1:681349/1‑149 (MQ=38)

                                                            aGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATCGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAg                                                                                      <  2:603219/149‑1 (MQ=255)

                                                             ggcGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc                                                                                     <  1:1410443/147‑1 (MQ=255)

                                                             gCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc                                                                                     <  1:292587/149‑1 (MQ=255)

                                                               cGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCgg                                                                                   <  1:1175302/149‑1 (MQ=255)

                                                                ggATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGTCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGa                                                                                  <  2:842314/149‑1 (MQ=255)

                                                                 gatgaagatgaaGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGaa                                                                                 <  1:979022/149‑1 (MQ=255)

                                                                 gatgaagatgaaGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGaa                                                                                 <  1:365504/149‑1 (MQ=255)

                                                                       gatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGctt                                                                           >  1:1478192/1‑149 (MQ=255)

                                                                        atgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttc                                                                          <  2:1062101/149‑1 (MQ=255)

                                                                        aggaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttc                                                                          <  1:1322198/147‑1 (MQ=255)

                                                                          caagGACGGTACCAGCATCAATACCGAGAATGCCGTAGGCATGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttctt                                                                        <  2:203275/148‑1 (MQ=38)

                                                                           aagGACGGGACGAGTATTAATAGTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCttcttc                                                                       <  1:300245/149‑1 (MQ=255)

                                                                            agGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCa                                                                      <  1:1264833/149‑1 (MQ=255)

                                                                              gccgggacgTGTATTACTATTGCGATTCCTGTAGGCCTGATAAGACGCGTCAAGCGGCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCAcc                                                                    <  1:667165/147‑1 (MQ=39)

                                                                               acgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCa                                                                   >  1:653417/1‑149 (MQ=255)

                                                                                 tggacgAGTATTAGTTTTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGc                                                                 <  2:1458276/148‑1 (MQ=255)

                                                                                 gggactGGTATGAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGc                                                                 <  2:68101/149‑1 (MQ=255)

                                                                                 gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGc                                                                 <  1:471081/149‑1 (MQ=255)

                                                                                  ggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGcc                                                                <  2:1247626/149‑1 (MQ=255)

                                                                                    acgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCtt                                                              <  2:1188346/149‑1 (MQ=255)

                                                                                    acgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCCGCGGAACCCCTTCTTCACGAGCCtt                                                              >  2:505922/1‑149 (MQ=255)

                                                                                       aGTTTTAATATGGTGAATCCTGTAGGCCTGCTAAGACGCGTCAAGCGTCGCATCCGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCGTCACCAGCCTTaaa                                                           <  2:428427/149‑1 (MQ=255)

                                                                                       aGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTaaa                                                           <  1:461464/149‑1 (MQ=255)

                                                                                          atgaaTATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAacac                                                        <  2:390597/146‑1 (MQ=255)

                                                                                           ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCCATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTACAccca                                                       >  2:612310/1‑149 (MQ=255)

                                                                                              atatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATaa                                                    <  1:894946/149‑1 (MQ=255)

                                                                                              atatTGTGAATCCTGAAGGCCTGATAAGACGCGCCAAGCGTCGCACCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATaa                                                    <  1:404771/149‑1 (MQ=255)

                                                                                               tatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAg                                                   >  2:1455852/1‑149 (MQ=255)

                                                                                               tatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCCTCTTCACCAGCCTTAAACACATAAg                                                   <  1:778396/149‑1 (MQ=255)

                                                                                                   tggAATCCTGTAGCCCTGATAAGGCGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgtggt                                               <  2:761625/147‑1 (MQ=255)

                                                                                                   gtgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgtggt                                               <  1:1172407/149‑1 (MQ=255)

                                                                                                   gtgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACAATGAAAAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCACCTCCCAGCGGAACCGCTTCTCCACCAGCCTTAAACACATagctgcc                                               >  1:330556/1‑143 (MQ=38)

                                                                                                    tgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAACCGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgtggtg                                              <  1:823549/149‑1 (MQ=255)

                                                                                                      aaTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGtt                                            >  2:1314855/1‑149 (MQ=255)

                                                                                                      aaTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGtt                                            >  2:541370/1‑149 (MQ=255)

                                                                                                          cTGTAGGCCTGATAAGACGCGTCAAGCGTCGCCTCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCggg                                        <  2:635313/149‑1 (MQ=255)

                                                                                                           tGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGAATACCGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGc                                       >  1:1207928/1‑149 (MQ=255)

                                                                                                             tAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCa                                     <  1:251892/149‑1 (MQ=255)

                                                                                                                 ccTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCa                                 <  1:1027273/149‑1 (MQ=255)

                                                                                                                 ccTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCa                                 <  1:246381/149‑1 (MQ=255)

                                                                                                                   tGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCCCCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCagc                               >  1:347594/1‑149 (MQ=255)

                                                                                                                     aTAAGACGCGTCAAGCGTCGCATCAGGCACTATGACCAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCagcgt                             <  1:451457/149‑1 (MQ=255)

                                                                                                                     aTAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCAGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCagcgt                             <  1:1280827/149‑1 (MQ=255)

                                                                                                                      tAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCagcgta                            <  2:1203311/149‑1 (MQ=255)

                                                                                                                        aGACGCCTCGAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCagcgtagc                          <  2:1232478/149‑1 (MQ=255)

                                                                                                                         gACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCagcgtagcg                         >  2:831999/1‑149 (MQ=255)

                                                                                                                         gACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGCGCACCCagcgtagcg                         >  1:587885/1‑149 (MQ=255)

                                                                                                                          aCGCGTCAAGCGTCGCATCAGGCACGATGATCAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGAAACCGCTTCTTCACCAGCCTTAAACAAATAAGTGGTGTTCGGGCCACCCagcgtagcgt                        >  1:804459/1‑149 (MQ=255)

                                                                                                                           cgcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTg                       <  1:262976/149‑1 (MQ=255)

                                                                                                                             cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGAc                     <  1:498688/149‑1 (MQ=255)

                                                                                                                              gTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGAcc                    <  1:1453/149‑1 (MQ=255)

                                                                                                                                  aGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTa                <  1:1349968/149‑1 (MQ=255)

                                                                                                                                  aGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTa                >  2:1402348/1‑149 (MQ=255)

                                                                                                                                  aGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACACAGCGTAGCGTGACCTTTa                <  2:1055280/149‑1 (MQ=255)

                                                                                                                                      tCGCATCAGGCACTATGAAGAAGAGGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCa            <  2:365297/149‑1 (MQ=255)

                                                                                                                                       cGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGCACCGGTCCTTCACCAGCCTTAAACACATCAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCAc           <  2:417160/149‑1 (MQ=255)

                                                                                                                                         cATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCACtg         >  2:461812/1‑149 (MQ=255)

                                                                                                                                         cATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCACtg         <  1:243617/149‑1 (MQ=255)

                                                                                                                                            cAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCACTGTGa      <  2:15892/149‑1 (MQ=255)

                                                                                                                                              ggCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCACTGTGATc    >  1:1028383/1‑149 (MQ=255)

                                                                                                                                               gCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCACTGTGATcc   <  1:1237637/149‑1 (MQ=255)

                                                                                                                                                cACTATGAACAAGAGGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCACTATGTTcat  <  2:193355/149‑3 (MQ=255)

TGGGAGATATGCAGCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAT‑CATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGTGGTGTTCGGGCCACCCAGCGTAGCGTGACCTTTACTCACTGTGATCCA  >  NC_000913/4229267‑4229559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.