| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,214,646 | 0 | T | G | 25.6% | 153.5 / 17.6 | 82 | S534S (TCT→TCG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| Reads supporting (aligned to +/- strand): ref base T (35/26); new base G (0/21); total (35/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.33e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTACCC > NC_000913/3214498‑3214794 | aaCGTATGCTGATGCCGGCAGACAAGATCCGCAACGTGCAGAAGATCGCCAAACAGCCAACCTCCAGGGAACCGCCGATCGGTGATGATGAAGATGAGCATCGGGGGGAGTTCATCGAGGGTACCACCCTCGAGCTGCCGCTGGATTCt > 2:1358720/1‑149 (MQ=255) aCGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTg > 1:242431/1‑149 (MQ=255) tATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGa > 2:915884/1‑149 (MQ=255) aTGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGa < 1:142155/149‑1 (MQ=255) gCCGGAGAACAAGACACGCAAAGCGTTGAATATCGCCTAAGTTCCAATTTCTATGGATGTGCTGATCGGTGATGATGAAGTTTCGCAGCTGGGGGATTTCATCGAGGATACCACCCTCGTGCTTTTTCATGATTCGGCGACCACCGaga < 2:1071578/149‑3 (MQ=255) gCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTNGNCCTGCCCCTGGATTCTNCGACCACCGaaa > 1:626637/1‑149 (MQ=255) ggAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGcc > 1:1402355/1‑149 (MQ=255) aCAAGATCCGCAAAGTGCTGAAGATCGCCACAGCGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATCCGCATCCGGGGGCTTTCATCGAGGATACCACCCCCGAGCCGCCGCTGGATTCTGCGACCCCCGAACGCCggcgg > 2:780518/1‑148 (MQ=255) cAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCtgcgtg > 1:1406582/1‑149 (MQ=255) aTCCGCAAAGTGCTGAAGATCGCCAAATAGCCAATCTCCATGGCAACGACTATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCTCCGAAAGCCTGCGTGCGGc < 1:1127234/149‑1 (MQ=255) tCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGGTCGGTTATGATGAAGATTCGCATCTAGGGGATTTCATCGAGGATACCACCCTCGGGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTCCGGCa > 2:1024436/1‑149 (MQ=255) gCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACg < 1:545087/149‑1 (MQ=255) cAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCGGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGc > 1:890376/1‑149 (MQ=255) cTGAAGATCGCCAAAGAGCCAATCTCCGTGGAACCGCCGATCGGGGATGATGAAGTTTCGCATCTGGGGGATTTCATCGAGGTTACCACCCTTGTTTTTTTTAATGATACGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGt < 2:135645/149‑1 (MQ=255) cTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCCGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCACCCCACGCCGt > 2:147151/1‑149 (MQ=255) gAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGGgc > 1:700754/1‑149 (MQ=255) aGACCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATCTCAGCGAGGATACCCCCCTTGTTTTTTTTAATGATACGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTgctg < 2:1549274/149‑1 (MQ=255) cGCCAAAGAGCCGACGTCCATGGACGCGCCGATCGGTGATGATGTAGGTTCGTATCTGGGGGACTTCATCGAGGTTACCGCCCTTGTTTTTTTTCATGATACGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTgctggctg < 2:254738/149‑1 (MQ=255) cGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTgctggctg < 1:975281/149‑1 (MQ=255) ccAAAGAGCCATTCTCCAGGGAATCGCCGATCGGTTATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCGGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCtggctggc < 1:932660/149‑1 (MQ=255) ccAAAGAGCCAATCTTCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCtggctggc < 1:1390063/149‑1 (MQ=255) aTCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACcgcgcg < 1:627124/149‑1 (MQ=255) gtcCATGGACACGCCGATCTTTGTTTTGTGAGATTCGCATCTGCGGGATTGCATAGAGGATACCACCCTCGTTTTTTTTAATGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTg < 2:546333/148‑1 (MQ=255) cATGGAAACGCCGATCGGTGTTGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTTTTGTTGTTGCATGATACGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAg < 2:1479539/149‑1 (MQ=255) cATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAg < 1:694325/149‑1 (MQ=255) aTGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGc > 1:1477651/1‑149 (MQ=255) tGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCa > 1:530944/1‑149 (MQ=255) aaaCGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAGCGCACGACGTGCTGGCTGGCCAG‑ACCGCGCGTGAAGCaaaa > 2:1235008/1‑149 (MQ=255) acgcccGATGGGGGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCCCCCTCTTGTTTTCTAAGGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAg < 2:172021/145‑1 (MQ=255) gCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTc > 1:1233293/1‑149 (MQ=255) gCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTc > 1:1262972/1‑149 (MQ=255) gctCGGTGGTGTGGCAGGTTGGCCTCTGGGGGATCTCCTCGAGGCTACCACCCTTGTGTTTCCTCATGATACGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGc < 2:40919/147‑1 (MQ=255) ttCGGTTATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCAACATAATCACTTTTGTTTCTGCGACCCCCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGCGAAGCAAAAGTTCTGCg < 1:362518/148‑1 (MQ=255) ggTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGTGCTGCCGCTGGATTCGGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTAt < 2:379514/149‑1 (MQ=255) gTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATg > 1:673922/1‑149 (MQ=255) gTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATg < 1:443584/149‑1 (MQ=255) tgatgttgaAGGTGCGCATGTGGGGGTTTTCATCGGGGATACCACCCTCGAGCTGCTGCTTGATTCGGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGc < 2:626637/149‑1 (MQ=255) atgaAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGCGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAACGTTCTGCGCATGCGttcc > 2:1395976/1‑147 (MQ=255) gaAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTGTGCGTTTCgg > 1:576743/1‑149 (MQ=255) gaAGATTCGCATCTGGGGGATTTCATCCAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTCCGTCTGCGTTTcag > 1:1303778/1‑147 (MQ=255) gtttggCATCTGGGGGATTTCATCGAGGATACCCCCCTTGTGCTGTCGCTGGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTAt < 2:372742/144‑1 (MQ=255) gATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGCCTGGCCTGTATCGTAC‑TCATGCAAAAGTTCCGCGTATGCGTTTCGGTAt < 1:1145801/149‑1 (MQ=255) ttCGCATCTGGGGGATTTCATCGAGGATGCCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCg > 1:1014143/1‑149 (MQ=255) tCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCCCCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCGGGCCGG‑ACCGCCCGTGAAGCAAACGTTCTCCGCATGCCTTTCGGtgcgag > 2:1342383/1‑144 (MQ=255) ggCATGTGGGTGATTTCACCGAGGAGACCCCCCTTGTGTTTCCGCTGGATACGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGat < 2:1485224/148‑1 (MQ=255) gCATCTGGGGGATTTCATCGAGGATACCACCCTTGTTTTGTTGATGGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGata < 2:527414/149‑1 (MQ=255) gCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAGGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTCAAGGAAAAGATCTGCGTACACGGTTCGGTATCGaca > 2:861086/1‑147 (MQ=255) gCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGata > 1:1242411/1‑149 (MQ=255) cATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGatat < 1:847021/149‑1 (MQ=255) aTCTGGGGGATTTCATCGAGGATACCACCCTCGTGCTGCCGCAGGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATg < 2:1517851/149‑1 (MQ=255) aTCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGAGTATGCGTTTCGGTATCGATATg < 1:819373/149‑1 (MQ=255) tgggTTTTCATCCATGATTCCACCCTCTTGTTTTTGAAGGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAacac < 2:155767/148‑1 (MQ=255) ggggATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAacac < 1:1173397/149‑1 (MQ=255) ggaaTTTCATCGAGGATACCACCCTCTATTTGCCTCTTGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACAcc < 2:647217/146‑1 (MQ=255) aTTTCATCGAGGCTCCCCTCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTCCGTATGCGTTTCGGTATCGATATGAACACCGAc < 1:994261/149‑1 (MQ=255) ttCATCGCGGACACCCCCCTCGACCTGCCGCTGGATTCTGCGACCACCCAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTa < 1:763693/149‑1 (MQ=255) ttCAGCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCCCCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTa < 1:764055/149‑1 (MQ=255) aTCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCCCCGAAAGCCTGCGGGGGGCACCGGGAGACGTGCTGACAGCCCGG‑CCCCCGCGAGAAGAAAGAGTACAGCGTATGACTTTCCGTCTCAATATGCACACCCACGacca > 2:764775/1‑147 (MQ=255) gATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGga < 1:931675/149‑1 (MQ=255) caccCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCGGCGTGCGGCAACGCACGACGTGCTGGCTGGCCGG‑ACCGCGCGTGAAGCCAAAGGTCTGCGTAGGCCGTTCGGTAGCGATATGAACCCCAACTACCCCCCGgaaagag > 2:716351/1‑145 (MQ=255) accCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGt < 1:521366/149‑1 (MQ=255) accCTCGAGCTGCCGCTGGATTCGGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGt < 1:616021/149‑1 (MQ=255) ccTCGGGCTGCCGCTGGATTCTGCGACCACCGAAAGCCGGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAATACCGACTACACGCTGGAAGAAGTgg < 1:780518/149‑1 (MQ=255) ccTCGGGCTGCCGCTGGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTgg < 2:1402355/149‑1 (MQ=255) ccTCGCGCTGCCCCTGGATTCGGCGACCACCGAGAGCCGGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTgg < 2:576743/149‑1 (MQ=255) ccTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTgg > 1:383449/1‑149 (MQ=255) ccTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTgg < 2:1014143/149‑1 (MQ=255) ccTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCGGCGCTCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGAGCGTGGACCAAAAGTTGTGCGTAGGGGGTGAGGTATCGATATGAACACCGACCACAAACAGGAAGAAgggg > 2:1437445/1‑149 (MQ=255) cTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTggg > 1:652047/1‑149 (MQ=255) tgttccGCTGGATTCTGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAAc < 2:1233293/145‑1 (MQ=255) gCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGt > 1:1200428/1‑149 (MQ=255) ccGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGtt > 1:265778/1‑149 (MQ=255) cGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCaa > 2:184544/1‑39 (MQ=255) cGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCaa < 1:184544/39‑1 (MQ=255) cGCTGGATTCGGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTc < 2:1542952/149‑1 (MQ=255) cTGGATTCGGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGGCGTGCTGGCCGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGa < 2:673922/149‑1 (MQ=255) ggATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACg < 1:915884/149‑1 (MQ=255) ggATGCTGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACg < 2:973330/149‑1 (MQ=255) gATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCgccgg > 2:121983/1‑145 (MQ=255) gATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGt > 2:95917/1‑149 (MQ=255) ttCTGCGACCACCGAGAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACAAGCTGGAAGAAGTGGGTAAACAGTTCGACGTTa < 2:530944/149‑1 (MQ=255) ttCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTa > 1:1388900/1‑149 (MQ=255) tCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTAc > 1:515967/1‑149 (MQ=255) tGCGACCACCGAAAGCCTGCGTGCGGCAGAAGTCGAGGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTAccc > 2:1107192/1‑149 (MQ=255) tGCCACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTAccc < 2:691787/149‑1 (MQ=255) | AACGTATGCTGATGCCGGAAGACAAGATCCGCAAAGTGCTGAAGATCGCCAAAGAGCCAATCTCCATGGAAACGCCGATCGGTGATGATGAAGATTCGCATCTGGGGGATTTCATCGAGGATACCACCCTCGAGCTGCCGCTGGATTCTGCGACCACCGAAAGCCTGCGTGCGGCAACGCACGACGTGCTGGCTGGCCTG‑ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTACCC > NC_000913/3214498‑3214794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |