Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp 100% insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979269 1979278 10–776 81 [0] [0] 82 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)71 (1.160) 62/260 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913/1978357‑1978650
                                                                                                                                                 |                                                                                                                                                    
aaaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATGTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTCCTTACCATGAATGtat                                                                                                                                                   >  2:387812‑M1/1‑146 (MQ=255)
  aTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                                 <  1:1118896‑M1/149‑6 (MQ=255)
  aTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                                 >  2:1119793‑M1/1‑144 (MQ=255)
        cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTTAACATAAATGtatgagtcata                                                                                                                                           >  1:536561‑M1/1‑138 (MQ=255)
         tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                          >  1:718205‑M1/1‑137 (MQ=255)
         tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                          >  1:335773‑M1/1‑137 (MQ=255)
              acTTATCTAAGATTTTCCCTAAATCGACGCAACTGTACCCGTCACTACACGAAGAAACACCGGGCATGCGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                                     >  2:814689‑M1/1‑132 (MQ=255)
                ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                                   >  1:617511‑M1/1‑130 (MQ=255)
                   tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                                >  1:440182‑M1/1‑127 (MQ=255)
                    cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                               <  2:515007‑M1/149‑24 (MQ=255)
                     tAAGATTTTTCCTAAATCGACGCTACTGTACTCGTCACTACCAGATAAATCAACTAAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                              <  1:1124524‑M1/149‑25 (MQ=255)
                     tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGGGGGGGTCCGCGTTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACGTAAATGtataagtcctacttttgttatggg                                                                                                                              >  2:219588‑M1/1‑125 (MQ=255)
                      aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATACAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                             >  1:780184‑M1/1‑124 (MQ=255)
                       aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtacaagtgataattttgttttggggg                                                                                                                            >  1:690722‑M1/1‑123 (MQ=255)
                          tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTCTCAATACTGCGTGTTCCAGATCACACAAAGAACTCAATTACTTAACATAAATGtataagtcatacttttgatttgggtgtgt                                                                                                                         >  2:413702‑M1/1‑120 (MQ=255)
                            tttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCACTAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                       <  1:159362‑M1/149‑32 (MQ=255)
                               tctAAATCGACGCACCTTTCCTCGTCACTACACGCACATACAACGGAGGGGGGTTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                                    <  1:211023‑M1/148‑35 (MQ=255)
                                cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                                   >  1:1105750‑M1/1‑114 (MQ=255)
                                cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                                   >  1:908208‑M1/1‑114 (MQ=255)
                                     tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                              <  2:216157‑M1/149‑41 (MQ=255)
                                        aCGGAACTGTACTCGGCACTGCACGCAGATACAACGGAGGTGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaa                                                                                                           <  2:738425‑M1/149‑44 (MQ=255)
                                        aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaa                                                                                                           <  1:691014‑M1/149‑44 (MQ=255)
                                          gCAACTGCCCTTGTCACTCCCCGCACATACAACGGAGGGGGGCTGCGAGTTTTAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                         <  2:910078‑M1/149‑46 (MQ=255)
                                              cTGTATTCTTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                                     <  1:320306‑M1/149‑50 (MQ=255)
                                                 tACTCGTCACTACACGCACAGTCAACGGAGGTGGGCTGCGATTTTCAATAATGCGTAATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                                  <  2:1002180‑M1/149‑53 (MQ=255)
                                                  aCTCGTCACTACACGCACCTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                                 <  1:659827‑M1/149‑54 (MQ=255)
                                                   cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                                                                                >  2:387448‑M1/1‑95 (MQ=255)
                                                      gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                                                                             >  1:221838‑M1/1‑92 (MQ=255)
                                                       tCAATACACGCCCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttctgttttgcgtgtatttcaatctgttaaaaagtttctcgccacg                                                                                            <  2:442058‑M1/149‑59 (MQ=255)
                                                        caccacACGCACCTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                           <  2:952682‑M1/149‑60 (MQ=255)
                                                           tACGCGCACATACAACGGAGGGGGGCTGCGATTTTCGATAATGCGTGATGCAGATCACACAAAGCCCTCAATTACTTAACATAAATGtataagtcatactttgtttttgggtgtagttcaatctattaaaaaggttttggctaccgtag                                                                                        >  2:8016‑M1/1‑87 (MQ=255)
                                                            acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgccaagctagc                                                                                       >  2:780862‑M1/1‑86 (MQ=255)
                                                              acGCAGAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACGAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcttgcaa                                                                                     >  2:1012743‑M1/1‑84 (MQ=255)
                                                                gCACATACAACGGCGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtcttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                                   >  2:701380‑M1/1‑82 (MQ=255)
                                                                gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                                   >  1:739661‑M1/1‑82 (MQ=255)
                                                                  acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                                 >  2:828761‑M1/1‑80 (MQ=255)
                                                                   caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTAAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaccctagcaagcaaa                                                                                >  2:129439‑M1/1‑79 (MQ=255)
                                                                    aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagccaaa                                                                               >  2:98207‑M1/1‑78 (MQ=255)
                                                                     tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                              <  1:458706‑M1/149‑73 (MQ=255)
                                                                     tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagacatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctaccaagcaaaaa                                                                              >  2:623457‑M1/1‑77 (MQ=255)
                                                                      aCAACGGAGGGGGGCTGCGATTTTCAATAATGCTTGATGCAGATCACACAAAACACTCAATTACCTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                                                                             <  2:1012010‑M1/149‑74 (MQ=255)
                                                                       cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                            >  2:692448‑M1/1‑75 (MQ=255)
                                                                       cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                            <  2:335773‑M1/149‑75 (MQ=255)
                                                                           ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                                        >  2:103479‑M1/1‑71 (MQ=255)
                                                                             aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGACCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                                      <  1:684980‑M1/149‑81 (MQ=255)
                                                                                ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaa                                                                   <  2:229419‑M1/149‑84 (MQ=255)
                                                                                ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaa                                                                   <  2:25783‑M1/149‑84 (MQ=255)
                                                                                ggggCTGCGAGTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTATCCTCTTGGtttttctcatactgttgttttgggtgtatttcaatctgttaaaaagtttttcgctacggtagcaagcaaaaataaaacaggaa                                                                   >  2:245748‑M1/1‑66 (MQ=255)
                                                                                   gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                >  2:256678‑M1/1‑63 (MQ=255)
                                                                                      gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtgtaagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                             >  1:364893‑M1/1‑60 (MQ=255)
                                                                                       cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcga                                                            >  1:1047418‑M1/1‑59 (MQ=255)
                                                                                          ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagctagcaaaaatgaaacaggaataatcgaaat                                                         >  1:500217‑M1/1‑56 (MQ=255)
                                                                                          ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                         <  2:907254‑M1/149‑94 (MQ=255)
                                                                                                ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaggcaaaaatgaaacaggaataatcaaaatgggatg                                                   >  2:681619‑M1/1‑50 (MQ=255)
                                                                                                 taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt                                                  >  1:1064472‑M1/1‑49 (MQ=255)
                                                                                                  aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                                 >  1:808077‑M1/1‑48 (MQ=255)
                                                                                                   atGTGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttg                                                <  2:1108067‑M1/149‑103 (MQ=255)
                                                                                                    tGCGTGATGCAGATCACACAGAACACACAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                               <  1:495677‑M1/149‑104 (MQ=255)
                                                                                                       gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca                                            >  1:211146‑M1/1‑43 (MQ=255)
                                                                                                       gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca                                            >  1:842498‑M1/1‑43 (MQ=255)
                                                                                                          aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                         >  2:475591‑M1/1‑40 (MQ=255)
                                                                                                                aacacacaaaACACACAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                                   <  2:97236‑M1/147‑116 (MQ=255)
                                                                                                                 tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataagggaaaagggatgttgcgcacagtcaaaat                                  >  1:234960‑M1/1‑33 (MQ=255)
                                                                                                                     acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                              >  1:335173‑M1/1‑29 (MQ=255)
                                                                                                                       aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                            <  1:103479‑M1/149‑123 (MQ=255)
                                                                                                                         aaCACTCCATCACTTCACATAAATGgataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc                          <  2:745268‑M1/149‑125 (MQ=255)
                                                                                                                             cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaa                      <  1:692448‑M1/149‑129 (MQ=255)
                                                                                                                              tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcggaatgggatgttgcgcacagtccaaataactaaccctcaa                     >  2:948113‑M1/1‑20 (MQ=255)
                                                                                                                              tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa                     >  1:152694‑M1/1‑20 (MQ=255)
                                                                                                                              tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacactagcaagcaaaaatgaaacaggaataatcgaactgggatgttgcgcccagtcaaaataactacccgtaaa                     >  2:574316‑M1/1‑20 (MQ=255)
                                                                                                                                aatgtcttgacACAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaagaatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata                   <  1:5151‑M1/144‑132 (MQ=255)
                                                                                                                                aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaataggatgttgcgcacagtcaaaaacactcaccgtaacta                   >  2:528224‑M1/1‑18 (MQ=255)
                                                                                                                                aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagaatgcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata                   >  1:842729‑M1/1‑18 (MQ=255)
                                                                                                                                 aTTACTTAACCTAAATGgataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa                  <  1:102273‑M1/149‑133 (MQ=255)
                                                                                                                                  ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat                 <  1:977416‑M1/149‑134 (MQ=255)
                                                                                                                                          cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct         <  2:617511‑M1/149‑142 (MQ=255)
                                                                                                                                           aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgcta        >  2:947383‑M1/1‑7 (MQ=255)
                                                                                                                                              aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctcgcaagcaaaaatgaaacaggaataatcgaactgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataa     >  2:1102618‑M1/1‑4 (MQ=255)
                                                                                                                                               aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaa    >  2:383909‑M1/1‑3 (MQ=255)
                                                                                                                                               aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggaggttgcgtccagtcaaaataactcaccgtaaataatcaactgctataaa    >  2:383934‑M1/1‑3 (MQ=255)
                                                                                                                                                 gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaata  <  1:479750‑M1/149‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913/1978357‑1978650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.