New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4040480NA (NA)12 (0.170) 5/282 10.3 30.1% intergenic (+58/‑36) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 = 4040504 29 (0.390)intergenic (+82/‑12) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

TCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACT  >  NC_000913/4040462‑4040626
                  |                                                                                                                                                  
tCAGCCTGATACAGATGAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATGTGCCTGGCGGCAGTAGCGCGGGGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGTCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCAt                  <  1:592597/149‑1 (MQ=255)
    ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGCAAAACCATAGCGCCAATGGTAGTGTGGGGTCTCCTCATGCga              >  1:1154656/1‑149 (MQ=11)
    ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCga              <  2:1234890/149‑1 (MQ=32)
    ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCCGGCGGCAGTAGCGCGGGGGTCCCACCTGACCCCATGCCGAACGCAGAAGTTAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCga              <  2:294485/149‑1 (MQ=255)
      tGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCgaga            <  1:1135181/149‑1 (MQ=32)
         tACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGCGTa         >  1:78114/1‑149 (MQ=17)
         tACAGATTAAATCAGAACGCAGAAGCGGTCTGACAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTa         <  2:1165382/149‑1 (MQ=17)
              aTTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAAGTCAGAAGTGAAAAGCCGTAGCGCCGATGGTAGTGGGGGGTCTCCTCAGGCCAGGCTAGGGaa    >  2:856336/1‑149 (MQ=11)
              aTTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGaa    <  1:621184/149‑1 (MQ=32)
              aTTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCAAGAGTAGGGaa    >  1:283066/1‑149 (MQ=17)
                tAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACt  >  1:970338/1‑149 (MQ=32)
                  |                                                                                                                                                  
TCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACT  >  NC_000913/4040462‑4040626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.