| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 3 (0.040) | 51 (0.770) | 43/262 | 0.7 | 93.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 4 (0.060) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913/1209476‑1209767 | tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGTCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa < 1:441225/149‑1 (MQ=255) gcggatgctgttgcggcagtccccccccacagaatgattactgattgctcaatacccccacgcataaccggtatagctatgaaatcggtgcgtcctaatgtagccgttgctgctttgagttttgctccttctcccaaaccaaCGTTTAt < 2:907423‑M2/7‑1 (MQ=255) gcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctacattgagttttgctccttctcccaaaccaaCGTTTAt > 1:57201‑M2/143‑149 (MQ=255) agatgcttttgcggcattccacccccgctgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 2:941490‑M2/141‑149 (MQ=255) agatgcttttgcggcattccacccccactgaatgattactgattgctcaataccgccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 2:935404‑M2/141‑149 (MQ=255) atgcttttgcggcattccacccccactgaatgattactgcttgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccaaaaccaaCGTTTATGaaa > 2:233037‑M2/139‑149 (MQ=255) atgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa > 2:1047192‑M2/139‑149 (MQ=255) ttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga > 1:1232094‑M2/135‑149 (MQ=255) ttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga > 1:473810‑M2/135‑149 (MQ=255) gcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaagaa < 2:473810‑M2/19‑1 (MQ=255) gcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttcccccaaaccaaCGTTTATGAAAATgaagaa > 2:613605‑M2/131‑149 (MQ=255) cggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccgatgcgtcctaatgtaaccgttgctgctttgagttttgctccttctcccaaaccaaCGTTTTGGAAAATGAAGaaa > 1:496317‑M2/130‑149 (MQ=255) cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtctagctctgaatccggtgcgtcctaatgtagccgttgctgcattgagttttgctccgtcttccaaaccaaCGCTTATGAAAATGAAGAAATaa > 2:882535‑M2/127‑149 (MQ=255) acccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 2:150940‑M2/121‑149 (MQ=255) ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa > 2:1227455‑M2/119‑149 (MQ=255) cccactgaatgattactgattgctcaagaccaccaatcataaccggtatagctatgaaaccggtgcgtccgaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAAt < 2:1023748‑M2/32‑1 (MQ=255) gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg > 1:43504/1‑149 (MQ=255) cactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgccttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAGCAAGCAAATgg > 2:470695‑M2/116‑149 (MQ=255) tgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 2:830511‑M2/37‑1 (MQ=255) tgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAACAAATGGcat > 1:398003‑M2/113‑149 (MQ=255) aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 2:972758‑M2/111‑149 (MQ=255) cagAACAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt < 1:213148/149‑1 (MQ=255) tactgagtgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgccttgagttctgagctttctctcaaaccaaCGTCTATGGAAATGAAGACATAACAAGCAAAGTGCATCATTCCTg < 2:1189791‑M2/45‑1 (MQ=255) ctgcttgcgcaataccaacaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagcttttctcctgctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 1:174281‑M2/47‑1 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt > 1:152062‑M2/100‑149 (MQ=255) gctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTAcc > 2:560915‑M2/97‑149 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTGTTACCa > 2:1223211‑M2/96‑149 (MQ=255) ataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgtttctgcattgagttttgctccttctcccaaaccaaCTTTTATGAAAATGAAGACATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 2:245945‑M2/58‑1 (MQ=255) ataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 2:447163‑M2/58‑1 (MQ=255) ttCAGCCAGCCTGTTGGCGGAGTGGATGAAAGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTATCCCAAACCAACGTTTAAGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa > 1:645862/1‑149 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa > 2:1069444‑M2/77‑149 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagtgttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACACGCAGATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATgctca > 2:418363‑M2/77‑147 (MQ=255) gtatagctatgaaaccggggtgtcctaatgtagccgttgctgcattgagttttgctcctcctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 2:1119810‑M2/77‑1 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc < 1:972758‑M2/78‑1 (MQ=255) gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATg < 1:503816‑M2/82‑1 (MQ=255) gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAATCCTGCTTTTACCAGGGGGACTTAACATGCTTATTGGCTATg > 2:362412‑M2/68‑149 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa > 1:557425‑M2/66‑149 (MQ=255) atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttactccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGCCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATAGGCTATGAAc > 1:177789‑M2/65‑149 (MQ=255) gaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAGGAAGAAATAACAAGCAAATGGCATCATTCCTGCCTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc > 1:172507‑M2/63‑149 (MQ=255) cggtgcgtcctaatgtagccgttgctgcgttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTCTTACCAGGGGGATTTAACATGCTTATTGGCTATTTACGCGTATc > 2:1183039‑M2/58‑149 (MQ=255) tgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac < 1:454449‑M2/95‑1 (MQ=255) tgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac < 1:831845‑M2/95‑1 (MQ=255) aatgtagccttttcttcattgatttttcctccttctcccaaaccatCGTTTATGCAACTGAAGAAATACCAAGCGAATGGCATCTTTCCTGTTTTTACCAGGGTGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc < 2:435227‑M2/103‑1 (MQ=255) atgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 1:1069444‑M2/104‑1 (MQ=255) atgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 1:941490‑M2/104‑1 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa > 2:1155487‑M2/43‑149 (MQ=255) ccgttgctacattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac < 2:57201‑M2/110‑1 (MQ=255) tgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:1232094‑M2/114‑1 (MQ=255) tgctgcagtgagttttcctccttctcccgaaccaaCGTTTATGAAAATGTAGAAATAACAAGCAAATTGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTAATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:1059979‑M2/114‑1 (MQ=255) ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCGTGCTTTTCCCAGGGGGATTTACCAAGCTTATTCGCTATGTACGCGTATCAAGAAATGACCAGAACACAGATCt > 2:625285‑M2/34‑149 (MQ=255) ttgagttttgctccttctcccaaaacaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCCGAAGGGGAAGACATTCTTTTTGGCTATGTACGCGTATCACCACATGACCAAAACACAGATCTACAAc > 1:601056‑M2/29‑149 (MQ=255) gtgttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGGATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa < 2:594191‑M2/125‑1 (MQ=255) ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt > 2:1164122‑M2/24‑149 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt < 1:1047192‑M2/131‑1 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAaagcgccg > 2:440202‑M2/18‑147 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCAGa > 1:271043‑M2/17‑149 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAGATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCGACAACGTAATGCGCTGaa > 1:796173‑M2/16‑149 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc > 2:1035714‑M2/10‑149 (MQ=255) aatccaaCGTTTATGAAAATGAAGCAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGATCACAGATCTACAACGTAATGCGCTGAACTGtgcgg < 1:353117‑M2/142‑3 (MQ=255) aaaccgaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg < 2:190455‑M2/142‑1 (MQ=255) aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg < 1:935404‑M2/142‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGa < 2:669490‑M2/144‑1 (MQ=255) cAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGATTATACAAGGGGGAATGAAAATGCTGATTGGCTATGTATACAATAGAAGATATATTCTGAACACAGGATTACAGCGTAATGCGCTGAACGATGCAGGATg > 2:878705/1‑149 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCg > 1:707357‑M2/2‑149 (MQ=255) cGTTAATGACAATGAAGAAATAACAAGCAAATGGCATCATTCCCGCTTTTACCAGGGGGATTCAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa < 2:868115/149‑1 (MQ=255) | TGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913/1209476‑1209767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |