| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3398963 = | 84 (1.920) | 4 (0.090) | 3/266 | NT | 4.7% | coding (1014/1104 nt) | mreC | cell wall structural complex MreBCD transmembrane component MreC |
| ? | NC_000913 | 3399001 = | 82 (1.940) | coding (976/1104 nt) | mreC | cell wall structural complex MreBCD transmembrane component MreC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCTAATGAACGTCTGATGCAGATGATGCCGCAGGTATTGCCTTCGCCAGACGCGATGGGGCCAAAGTTACCTGAACCGGCAACGGGGATCGCTCAGCCGACTCCGCAGCAACCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3399113‑3398963‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgGTTGCTGCGGAGTCGGCTGAGCGATCCCCGTTGCCGGTTCAGGTAACTTTGGCCCCATCGCGTCTGGCGAAGGCAATACCTGCGGCATCATCTGCATCAGACGTTCATTA > NC_000913/3399001‑3399110 TGCTAATGAACGTCTGATGCAGATGCTGCCGCAGGTATTGCCTTCGCCAGACGCGATGGGGCCAAAGTTACCTGAACCGGCAACGGGGATCGCTCTGCCGACTCCGCAGCAACCGGCGAGAGGAAATGCAGCTACTGCGCCTGCTGCGC < 1:477256/149‑1TGCTAATGAACGTCTGATGCAGATGATGCCGCAGGTATTGCCTTCGCCAGACGCGATGGGGCCAAAGTTACCTGAACCGGCAACGGGGATCGCTCAGCCGACTCCGCAGCAACCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGC < 2:500083/149‑1TGCTAATGAACGTCTGATGCAGATGATGCCGCAGGTATTGCCTTCGCCAGACGCGATGGGGCCAAAGTTACCTGAACCGGCAACGGGGATCGCTCAGCCGACTCCGCAGCAACCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGC < 2:593786/149‑1TGCTAATGAACGTCTGATGCAGATGATGCCGCAGGTATTGCCTTCGCCAGACGCGATGGGGCCAAAGTTACCTGAACCGGCAACGGGGATCGCTCAGCCGACTCCGCAGCAACCGGCGACAGGAAATGCAGCTACCGCGCCTGCTGCGC > 2:54799/1‑149TGCTAATGAACGGCTGATGTAGATGATGCCGCAGGTATTGCTTTCGCCATACGCGATGGGGCCAAAGTTACCTGAACCGGCAACGGGGATCGCTCAGCCGACTCCGCAGCACCCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGC < 2:334101/149‑1 gcgAATGAACGTCTGATTCTGATGTTGCCGCTTGTATTGCCTTCGCCAGACGCCATGGGGCCACGGTGACCTGAACCGGCAACGGGGTTCCCTCAGCCGACTCCGCATCACCCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGCC < 2:117058/146‑1 TCGCTCAGCCGACTCCGCAGCAACCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGCCGGTTGCTGCGGAGTCGGCTGAGCGATCCCCGTTGCCGGTTCAGGTAACTTTGGCCCCATCGCGTCTGGCGAAGGCAATACCTGCGGCA > 2:763070/1‑149 AACCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGCCGGTTGCTGCGGAGTCGGCTGAGCGATCCCCGTTGCCGGTTCAGGTAACTTTGGCCCCATCGCGTCTGGCGAAGGCAATACCTGCGGCATCATCTGCATCAGACGCTCAT > 1:361524/1‑149 AACCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGCCGGTTGCTGCGGAGTCGGCTGAGCGATCCCCGTTGCCGGTTCAGGTAACTTTGGCCCCATCGCGGCTGGCGAAGGCCATACCTCCGGCATCATCTGCATCAGACGTTCAT > 1:724381/1‑149 CCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGCCGGTTGCTGCGGAGTCGGCTGAGCGATCCCCGTTGCCGGTTCAGGTAACTTTGGCCCCATCGCGTCTGGCGAAGGCAATACCTGCGGCATCATCTGCATCAGACGTTCATTA > 1:664482/1‑149 TGCTAATGAACGTCTGATGCAGATGATGCCGCAGGTATTGCCTTCGCCAGACGCGATGGGGCCAAAGTTACCTGAACCGGCAACGGGGATCGCTCAGCCGACTCCGCAGCAACCGGCGACAGGAAATGCAGCTACTGCGCCTGCTGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3399113‑3398963‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgGTTGCTGCGGAGTCGGCTGAGCGATCCCCGTTGCCGGTTCAGGTAACTTTGGCCCCATCGCGTCTGGCGAAGGCAATACCTGCGGCATCATCTGCATCAGACGTTCATTA > NC_000913/3399001‑3399110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |