New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3186094 =	NA (NA)	55 (1.250)	41/276	NT	100%	intergenic (+6/‑91)	yqiG/insC1	pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA
	?	NC_000913	3485933 =	0 (0.000)					intergenic (‑117/‑185)	yhfA/crp	OsmC family protein/cAMP‑activated global transcription factor, mediator of catabolite repression

AAGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA  >  NC_000913/3185946‑3186237                                                                                                                                                     |                                                                                                                                                aaGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGttatt                                                                                                                                                 <  2:717553/149‑1 (MQ=255) aaGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGttatt                                                                                                                                                 <  1:232172/149‑1 (MQ=255) aaGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGttatt                                                                                                                                                 >  1:780625/1‑149 (MQ=255) aaGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGttatt                                                                                                                                                 >  1:489472/1‑149 (MQ=255)    aTTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGa                                                                                                                                              <  2:427658/149‑1 (MQ=255)         ttACGAGTAATCGCATTTGGCCGGGTACGCCCAGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGc                                                                                                                                         >  2:436534/1‑149 (MQ=255)             gAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTTTCCCTTATTAGACTGGccccc                                                                                                                                     >  1:380273/1‑149 (MQ=255)             gAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGGGGATCAGATGTATAAAAAATTAAAATAAGCCACAATGAGCGAATTGATTACACGTATTTATTGTTCAATATCCGTTTTTTGACTGgccgcc                                                                                                                                     >  1:549785/1‑149 (MQ=255)                    cGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAAtct                                                                                                                              <  1:165363/149‑1 (MQ=255)                    cGCATTTGGCCGGGGTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAAtct                                                                                                                              >  2:482060/1‑149 (MQ=255)                       aTTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCa                                                                                                                           <  1:12407/149‑1 (MQ=255)                            gCCGGGTTCGCCCGGCCACATCATTAACGGATTACTGATAAGTTGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAAACTGGCCCCCTGAATCTCCAGACaa                                                                                                                      >  1:381463/1‑149 (MQ=255)                            gCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAAGATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTTAATCTCCAGACaa                                                                                                                      >  1:689611/1‑149 (MQ=255)                                   tCGCCCGGCTACATCATTAACGGATTGGCGATAAGTGGATAAAAAAAAAAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAatat                                                                                                               <  2:784862/149‑1 (MQ=38)                                   tCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAatat                                                                                                               <  1:513501/149‑1 (MQ=255)                                        cGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGCATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGCCTGGCCCACTGAATCTCAAGACAACCAATATCACtt                                                                                                          >  2:595063/1‑149 (MQ=255)                                            cacaTCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAt                                                                                                      >  2:101184/1‑149 (MQ=255)                                            cacaTCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAt                                                                                                      >  1:572666/1‑149 (MQ=255)                                                tcatTAACAGATTAATGATAAGTGGAGCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt                                                                                                  <  1:756874/149‑1 (MQ=255)                                                     aaCGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                                                                             >  1:730554/1‑149 (MQ=255)                                                     aaCGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGAGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCACCCTGAATCTCCAGACAAACAATATCACTTAAATAAGTGATAg                                                                                             >  1:510498/1‑149 (MQ=255)                                                         gATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTTAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                                                                         >  1:146725/1‑149 (MQ=255)                                                                gATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa                                                                                  <  1:271020/149‑1 (MQ=255)                                                                    aGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGCTCCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttt                                                                              <  1:415432/149‑1 (MQ=255)                                                                         aTCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGATTTTAGa                                                                         >  1:94834/1‑149 (MQ=255)                                                                            aGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATATTCTTAATACTAGTTTTTAGACTa                                                                      <  2:534167/149‑1 (MQ=255)                                                                            aGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTa                                                                      <  2:51709/149‑1 (MQ=255)                                                                                   taAAACATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTATTTATTg                                                               >  2:718867/1‑149 (MQ=255)                                                                                    aaaaaaTTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTAATTgg                                                              >  2:208548/1‑149 (MQ=255)                                                                                              aattaaCCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatg                                                    >  2:671918/1‑149 (MQ=255)                                                                                              aattaaCCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCACCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAGTGGAGAACCgatg                                                    >  2:580589/1‑149 (MQ=255)                                                                                                   aCCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgattga                                               >  1:683214/1‑149 (MQ=255)                                                                                                        aaTAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCGTGGGAGAACAGATGATTGATGTCt                                          >  1:585872/1‑149 (MQ=255)                                                                                                          tAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTa                                        <  1:38319/149‑1 (MQ=255)                                                                                                            aGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACACCCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGGGAACAGATGATTGATGTCTTAgg                                      >  2:434201/1‑149 (MQ=255)                                                                                                            aGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAgg                                      <  1:101184/149‑1 (MQ=255)                                                                                                                  ttGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGga                                <  2:295378/149‑1 (MQ=255)                                                                                                                     aTTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTCGGGCCGGAGaa                             >  1:725758/1‑149 (MQ=255)                                                                                                                          aaaTATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTGTTGGGGCGGGAGAAACGcg                        >  2:375019/1‑148 (MQ=255)                                                                                                                              atttattGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGGCTTAGGGCCGGAGAAACGCAGACg                    >  2:307871/1‑149 (MQ=255)                                                                                                                               tttattGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACgg                   >  2:68149/1‑149 (MQ=255)                                                                                                                                   ttGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTCGGCTTGTCATTGGAGAAAAGATGATTGATGTATTAGGGCCGGAGAAAAGCAGACTGCGTa               >  1:166406/1‑149 (MQ=14)                                                                                                                                   ttGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTa               <  1:436534/149‑1 (MQ=255)                                                                                                                                   ttGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTAATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGCAACGCAGACGGCGTa               >  1:693415/1‑149 (MQ=255)                                                                                                                                    tgttgcttATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAc              <  1:470951/143‑1 (MQ=255)                                                                                                                                    tGTTCATTATCCGTTATTAGACTGGCCACCTGAATCACCAGACAACCAATGTCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCGGGAGAAACGCAGACGGCGTAc              <  2:248078/149‑1 (MQ=255)                                                                                                                                    tGTTCATTATACGTTATTAGACTCGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATCGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAc              <  2:581552/149‑1 (MQ=255)                                                                                                                                    tGTTCAGTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATGAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGCTAATTTTCTTAGGGCCGGAGAAACGCAGACGGCGTAc              <  2:556390/149‑1 (MQ=14)                                                                                                                                     ctgtaTTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAcc             <  2:782389/145‑1 (MQ=255)                                                                                                                                          tttttcGTTATTAGGCTGGCCCCCTGAATCTCCAGGCAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACcacaca        <  2:172154/144‑1 (MQ=255)                                                                                                                                                gTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGaaaa  <  2:572666/149‑1 (MQ=32)                                                                                                                                                     |                                                                                                                                                AAGATTGCTTACGAGTAATCGCATTTGGCCGGGTTCGCCCGGCCACATCATTAACGGATTAATGATAAGTGGATCAGATGTATAAAAAATTAAAATTAACCACAATAAGCGAATTGATTAAAAATATTTATTGTTCATTATCCGTTATTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA  >  NC_000913/3185946‑3186237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.