New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2406863	3 (0.040)	78 (0.930)	62/294	0.3	96.3%	intergenic (‑224/‑696)	lrhA/alaA	transcriptional repressor of flagellar, motility and chemotaxis genes/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
	?	NC_000913	2996360 =	NA (NA)					intergenic (‑2/+10)	ygeO/insD1	pseudogene, orgA family, part of T3SS PAI ETT2 remnant/IS2 transposase TnpB

TGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2406715‑2406863 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  >  NC_000913/2996360‑2996506                                                                                                                                                                                                                                                                                                          TGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACT                                                                                                                                                     <  2:1174892/149‑1    GCCTCCTGGGCAGTCTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGA                                                                                                                                                  <  2:808565/149‑1    GCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGA                                                                                                                                                  >  2:1321420/1‑149    GCCCCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGA                                                                                                                                                  <  1:425948/149‑1      CTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGCATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATT                                                                                                                                                <  1:1002191/149‑1         CCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGC                                                                                                                                             >  1:51209/1‑149         CCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGC                                                                                                                                             >  1:51176/1‑149           TGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCC                                                                                                                                           <  1:714929/149‑1            GGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCC                                                                                                                                          <  1:554926/149‑1             GCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTTACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCT                                                                                                                                         <  2:604712/149‑1             GCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCT                                                                                                                                         >  2:746947/1‑149                   TCATCCGGAACCCGGACGAAAGTAAAAATGCATGTGAGTTGCACTAAAAACGCGGGTCACCTTGTTCCGTTATAATGCCTGAAGTAGATCCCAGAATATATCTTCAGGGATCGCATATCTATTAAGTTAGTGGATTTGCCCCGATATgt                                                                                                                                   >  2:1194323/1‑147                   TCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCCATATTg                                                                                                                                   >  1:1289466/1‑148                    ccTCCAGAACACGGGCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTC                                                                                                                                  >  2:978538/3‑149                      TCCGGACCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGAGTGACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCA                                                                                                                                <  2:771255/149‑1                       CCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACGCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTCTATTTCCAG                                                                                                                               >  2:1333966/1‑149                         GGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATAACTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGAC                                                                                                                             >  2:806903/1‑149                           AACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACAT                                                                                                                           <  2:603757/149‑1                             CCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAACAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCT                                                                                                                         <  1:244197/149‑1                                GGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTT                                                                                                                      <  1:495428/149‑1                                   CGAAAGTAAAAATGCATATGAGTTGCACTAATAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATC                                                                                                                   <  1:1258241/149‑1                                    GAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCA                                                                                                                  <  1:1091953/149‑1                                    GAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGCTATCA                                                                                                                  <  1:11399/149‑1                                     AAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCAC                                                                                                                 <  1:232882/149‑1                                      AAGTAAAGATGTATATGGGTTGCACTAAAAAAGCGATTCGCATTGTTCCGTTATAGTGCCTGAAGTAGGTCACGGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGTTTTGTCCCTATATTTCCGGATATCTGTTATCAtt                                                                                                                >  2:26776/1‑147                                         TAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAA                                                                                                             <  2:1148749/149‑1                                         TAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAA                                                                                                             <  2:883530/149‑1                                            AAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTGCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC                                                                                                          <  2:1239945/149‑1                                              ATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAT                                                                                                        <  1:1196635/149‑1                                               TGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATT                                                                                                       <  1:60910/149‑1                                               TGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATT                                                                                                       <  1:774630/149‑1                                                GCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTA                                                                                                      <  1:1101362/149‑1                                                   atcGAGTCGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATCTCTTCAGGGATCGCATCTCTATTAAGTTACTGGATTCGCCCCTATTTTTCCAGACATCTGTTATCCCTTAACCCATTACAA                                                                                                   <  2:610006/146‑1                                                   TATGAGTTGCACTAAAAAAGCGACTCTCATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAA                                                                                                   <  1:866465/149‑1                                                   TATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAA                                                                                                   >  2:1260329/1‑149                                                     TGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGC                                                                                                 <  1:1077498/149‑1                                                         TTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGC                                                                                             >  2:443021/1‑149                                                          gGCACTAAAACAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGCTCACAGAATATATCTTCAGCGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCT                                                                                            <  1:293028/148‑1                                                            CACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGC                                                                                          <  1:1043084/149‑1                                                             ACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCC                                                                                         >  1:530995/1‑149                                                             ACTAAAAAAGCGACTCACATTGTTACGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCC                                                                                         >  2:1126280/1‑149                                                               TAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGC                                                                                       >  2:1134865/1‑149                                                                AAAAAAGCGACTCACATTGTTGCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTCCCAGACATCTGTTATCACTTACCCCATTACAAGCCCGCTGCCGCA                                                                                      <  1:967549/149‑1                                                                       CGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTC                                                                               <  2:1276299/149‑1                                                                         ACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCC                                                                             <  1:773711/149‑1                                                                            CACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTG                                                                          >  2:133342/1‑149                                                                             ACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTACCGCGGATATTCCCGTGG                                                                         >  1:892504/1‑149                                                                                 TGTTCCGTTATAATGCCTGAACTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCTCTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAG                                                                     <  1:968846/149‑1                                                                                   TTCCGTTATAATGCCTGAAGTAGATCACAGAATTTATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCG                                                                   >  2:33380/1‑149                                                                                   TTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCG                                                                   <  1:1134269/149‑1                                                                                      CGTTATAATGGCTGAAGTAGAGCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATA                                                                <  2:451054/149‑1                                                                                       GTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAA                                                               <  2:811559/149‑1                                                                                           TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCA                                                           >  1:628982/1‑149                                                                                           TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCA                                                           <  1:443021/149‑1                                                                                             ATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATTTTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGC                                                         <  2:543091/149‑1                                                                                              TGCCTGAAGTAGATCACAGAATATATCTTCAGGGCTCGCATAGCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCAAGCGATAACCCAGCG                                                        >  2:1341207/1‑149                                                                                                ccgGAAGGAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCA                                                      <  2:199930/146‑1                                                                                                     AGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATG                                                 <  1:435401/149‑1                                                                                                        AGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGG                                              >  1:1263921/1‑149                                                                                                         GATCACAGAATATGTCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGGTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGA                                             >  2:849716/1‑149                                                                                                             ACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCC                                         >  2:938872/1‑149                                                                                                               AGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCCATAACCCAGCGCACTCTGCGGAGGCCAT                                       >  2:142830/1‑149                                                                                                                 AATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTC                                     >  2:373471/1‑149                                                                                                                 AATATATCTTCAGGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTC                                     >  1:1141633/1‑149                                                                                                                        CTTCAGGGATCGCATATCTATAAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAA                              <  2:812730/149‑1                                                                                                                         TTCAGGGAGCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCCCTCTGCGGATGCCAGTCGTTATAAT                             >  2:443185/1‑149                                                                                                                             ggcgTCGCATATCTATAAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTGATCACTTAACCCATTACAAGCCCGGTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTC                         <  2:939004/145‑1                                                                                                                             GGGATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGATC                         >  1:149398/1‑149                                                                                                                                ATCGCATATCTATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAA                      <  1:1134865/149‑1                                                                                                                                           ATTAAGTTACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGCTGCCATTCGTTATAATGCTCGAACGCGTCTGCAA           >  1:1069437/1‑149                                                                                                                                             ttgtaTACTTGATTTGCCCCTTAATTTCCAGACATCTGTTATCACTTAACCCATTATAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGG         <  2:289880/144‑1                                                                                                                                                  TACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCATATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTT    >  1:842785/1‑149                                                                                                                                                  TACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCTATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTT    <  2:1263921/149‑1                                                                                                                                                  TACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTT    <  1:746947/149‑1                                                                                                                                                  TACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCAGGACAAGCCCGCTGCCGCAGATATTCCCGTGGCGCGCGATAACGCAGCCCCCTATGCGGATGCCATTCGTTATACTGCTCGACCGCCGCTGCCAGGTTgtg    >  2:924251/1‑146                                                                                                                                                   ACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT   <  1:366912/149‑1                                                                                                                                                    CTGTATTTGCCCCTCGTTTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGCTCTTCCCGTGGCGAGCGATAACCCAGCTCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  <  2:37465/149‑1                                                                                                                                                    CTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGAGATTCCCGTGGCGTGCGATAAGCCAGCCCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCCAGGTTCTTTG  >  1:347264/1‑149                                                                                                                                                    CTGGATTTGCCCCCATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  <  1:373002/149‑1                                                                                                                                                                                                                                                                                                          TGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2406715‑2406863 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTG  >  NC_000913/2996360‑2996506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.