| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1097372 = | NA (NA) | 6 (0.070) | 6/290 | 11.6 | 6.2% | intergenic (+543/+193) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097531 = | 93 (1.100) | intergenic (+702/+34) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC > NC_000913/1097256‑1097484 | aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTgg > 1:1318582/1‑148 (MQ=11) ggggTTCCCGGTCTGGCCAACTGGCTGTCGCCAGTTGTCGGACCCCGGGCGGGGC‑TTCTCATCCCCCCGGTGTGTACAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACt < 2:22529/146‑1 (MQ=11) cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAAATGGCGGTGAGG‑GGGGGATTggaccc > 2:1053583/1‑144 (MQ=2) cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCGCTTCTTTAAATATGGCGGTGAGG‑GGGGGAttagacgc > 2:361416/1‑143 (MQ=0) ttCACGGTCTGTCCAACTGGCTGTCGCCAATTGTCGAACCCCGGTCGGGGC‑TTGTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGAAATTTCGTACGAGCTCTTCTTAAAATATGGCGGTGCGG‑GGGGGATTGACtcgct > 2:768716/1‑149 (MQ=11) cGGTCTGTCCAACTGGCTGTCGCCAGTTGGCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACtcgcttcgc < 2:1362251/149‑1 (MQ=25) aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGGAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCg > 2:516222/1‑149 (MQ=25) aCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTAAGG‑GGTGGATAGACTCGCTTCGCTCGCCCTGCgg < 1:768716/149‑1 (MQ=255) tGTCGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGcc > 1:304999/1‑149 (MQ=35) cGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGc < 2:887139/149‑1 (MQ=34) aGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCAc > 2:780443/1‑149 (MQ=35) gTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt < 2:304999/149‑1 (MQ=34) cGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt < 1:516222/149‑1 (MQ=34) aaCCCCGGTCGGGGT‑TTTTCATCCCCCCGGTTTGTGCAATATACGAAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCTTTAAATTTGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCa < 2:432435/149‑1 (MQ=11) aaCCCCGGTCGGGACACTCTC‑TCCCCCCGGGGTGCGCATCCTATGAAAGAAGAGCCCGTACGTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCa < 2:327417/149‑1 (MQ=11) aCCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCAc > 2:1270852/1‑149 (MQ=33) ccccGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGTTTTTTAAGGCCGCGCCTTCCTCCGAGCTCTTCTCTGGATGGGGCGGTGTGG‑GGCGGCTTGACGCGCTTCGGTTGTCCTGCGGGCAGCCCGCTCACTGCGTTCACg < 2:196481/149‑1 (MQ=2) ccccGGTCGGGGC‑TGCTCTTCCCCCCGGTGTGTGCAATATACGAAAAAAATGTCTGTTCTTTCGTACGGGCTCCTCCGTGAACTTCGCGGGGTGG‑GACACTCTGACCCGCCTCGCTCCCCCTGCGGGCAGCCCGCTCACTGCGTTCACg < 2:179956/149‑1 (MQ=2) cccGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATCCGAAAAAAAAGCCCGTACTGTCTTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGGTTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACgg > 2:854104/1‑149 (MQ=255) ccGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt < 1:780443/149‑1 (MQ=32) cGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTc > 2:428716/1‑149 (MQ=32) cGGTCGGGGC‑TTCTCATCCCCCCGGTGTGAGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGTCAGCCCGCTCACTGCGTTCACGGTc > 1:854661/1‑149 (MQ=17) gC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGTCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc < 1:889879/149‑1 (MQ=17) gC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc > 1:444479/1‑149 (MQ=32) c‑TTCTCATCCCCCCGGTGTGTGCAATATACG‑AAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGACGGTGAGG‑GGGGGGTTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCCACTg > 1:624677/1‑149 (MQ=255) tcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCGCTGCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCGTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCt > 1:1312209/1‑149 (MQ=12) cATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTCACACGCCCCGCTCGCCCTCCGGGCCGCCCGCTCACGGCGTTCGCGGGCCGTCCCACTGGGTg > 2:442976/1‑149 (MQ=11) aTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGGCTGTCCAACTGGCTGt > 1:1182587/1‑149 (MQ=17) cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGc < 1:428716/149‑1 (MQ=31) cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGc < 1:640882/149‑1 (MQ=31) ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCCCGGTCTGTCCAACTGGCTGTCGcc > 1:219892/1‑149 (MQ=11) ccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGcc > 1:917746/1‑149 (MQ=11) tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGGCTGTCCAACTGGCCGTCGCCAGTTGCCGaa > 2:1085590/1‑149 (MQ=2) gCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAc > 2:1308204/1‑149 (MQ=31) cAATATACGAAAAAAAAGCCCGTACTTTCATACGAGCTCTTCTTTAAATATGGTGGTGAGGCGGGGGTTTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAc > 1:854055/1‑149 (MQ=11) atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAcccc > 1:128609/1‑149 (MQ=32) | ACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGC‑TTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGG‑GGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC > NC_000913/1097256‑1097484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |