BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4542683 =	97 (0.790)	20 (0.170)	20/278	9.4	17.3%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
*	?	NC_000913	4542997 =	100 (0.860)	20 (0.170)	20/278	9.4	17.3%	intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 106 total aligned reads displayed.

ACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTT  >  NC_000913/4542851‑4543145

aCGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg                                                                                                                                                     >  1:1677399/1‑149 (MQ=255)

  gCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt                                                                                                                                                   <  1:345532/149‑1 (MQ=255)

  gCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt                                                                                                                                                   >  2:1460248/1‑149 (MQ=255)

    aTCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTc                                                                                                                                                 >  1:1098366/1‑149 (MQ=255)

       ttCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATc                                                                                                                                             >  2:1571963/1‑149 (MQ=255)

        tCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCt                                                                                                                                            >  1:681967/1‑149 (MQ=255)

        tCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCt                                                                                                                                            >  1:1409349/1‑149 (MQ=255)

          cTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTTTGAGTCAAAATGGCCCCAAATGTTTA‑ATCttt                                                                                                                                          >  1:1462148/1‑149 (MQ=255)

           tCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCtttt                                                                                                                                         >  2:1775570/1‑149 (MQ=255)

             aTTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTgg                                                                                                                                       <  2:1635418/149‑1 (MQ=255)

              ttcttcTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAAGAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTggg                                                                                                                                      <  1:6638/149‑1 (MQ=255)

              ttcttcCCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAATATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTggg                                                                                                                                      <  2:599158/149‑1 (MQ=255)

                 ttctCTCCAAAGACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ACCTTTTGGGGGa                                                                                                                                   >  2:1605340/1‑149 (MQ=255)

                 ttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGa                                                                                                                                   >  1:226339/1‑149 (MQ=255)

                 ttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATATTTTGGGGGa                                                                                                                                   >  1:1468338/1‑149 (MQ=255)

                   ctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGaaa                                                                                                                                 >  1:216340/1‑149 (MQ=255)

                    tctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGaaaa                                                                                                                                >  2:418479/1‑149 (MQ=255)

                      tcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACt                                                                                                                              >  2:1341670/1‑149 (MQ=255)

                      tcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACt                                                                                                                              <  1:832541/149‑1 (MQ=255)

                       ccAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTTATGGAGAAGTCAAAATGGACCCAAATGGTTC‑ATCTTTTGGGGGAAAACtg                                                                                                                             >  1:470944/1‑149 (MQ=255)

                        cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACtgt                                                                                                                            <  1:270263/149‑1 (MQ=255)

                        cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACtgt                                                                                                                            >  2:723557/1‑149 (MQ=255)

                         aaaaaCCTCCTCATGCAATATAAACATCTAAAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACtgtg                                                                                                                           <  2:1447874/149‑1 (MQ=255)

                         aaaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAACCTGACAAGGCTTCTCCTCTATGCGTTCTTCTATGGGTCAAAATGGCCCCAAATGTTTC‑ATTTTTTGGGGGAAAACtgtg                                                                                                                           <  2:1445804/149‑1 (MQ=255)

                         aaaaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACtgtg                                                                                                                           <  1:869520/149‑1 (MQ=255)

                               caccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAgtgt                                                                                                                     <  2:507365/149‑1 (MQ=255)

                                cccTCATGCAATATAAACATCTAGAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGtt                                                                                                                    <  1:926666/148‑1 (MQ=255)

                                 ccTCATGCAATATAAACATCTATAAATAAAGATAACAATATAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                                   <  2:955953/149‑1 (MQ=255)

                                  cTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                                                                                                  <  2:72426/149‑1 (MQ=255)

                                    cATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCACCAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa                                                                                                                <  2:1666882/149‑1 (MQ=255)

                                       gCAATATAAACATCTATAAATAAAGATAACCAGGTAGTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc                                                                                                             >  1:498321/1‑149 (MQ=255)

                                       gCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTCGCAGTc                                                                                                             >  2:1428862/1‑149 (MQ=255)

                                              aaaCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg                                                                                                      >  1:922433/1‑149 (MQ=255)

                                               aaCATCTATAAATAAAGATAACAATAGAATGTTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTA‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt                                                                                                     >  1:1591590/1‑149 (MQ=255)

                                               aaCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAAATGTGAGAGGGTGGCAGTCAAACTCGt                                                                                                     >  2:1431690/1‑149 (MQ=255)

                                                aCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                                                                                    >  2:1280963/1‑149 (MQ=255)

                                                aCAACTATAAAAAAAGAAAACAATAAAATAATAACCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATCTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                                                                                    <  2:899784/149‑1 (MQ=255)

                                                  aTCTATAAATACAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa                                                                                                  <  1:790753/149‑1 (MQ=255)

                                                  aTCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCGGTCAAACTCGTTTa                                                                                                  >  1:716680/1‑149 (MQ=255)

                                                       taaataaaGATAACAATAGAATATTAAGCCAACAAATAACCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa                                                                                             <  1:1119819/149‑1 (MQ=255)

                                                       taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa                                                                                             <  1:777889/149‑1 (MQ=255)

                                                        aaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac                                                                                            <  1:763665/149‑1 (MQ=255)

                                                         aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca                                                                                           >  1:1353815/1‑149 (MQ=255)

                                                          ataaaGATAACAATAGAATATTAGGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTGGGGGGAAAACTGTGCAGTGTTGGCAGTCAGACTCGTTTacaaaacaa                                                                                          >  1:1076905/1‑149 (MQ=255)

                                                           taaaGATAACAATAGAATATTAAGCCAACAAATAACCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                                         <  1:224887/149‑1 (MQ=255)

                                                            aaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg                                                                                        <  1:1957316/149‑1 (MQ=255)

                                                             aaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt                                                                                       <  2:681967/149‑1 (MQ=255)

                                                                   aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAACCTCGTTTACAAAACAAAGTGTACAg                                                                                 >  2:740507/1‑149 (MQ=255)

                                                                    cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAATTGTACAGa                                                                                >  1:1276446/1‑149 (MQ=255)

                                                                    cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa                                                                                >  2:1052101/1‑149 (MQ=255)

                                                                     aatagaatagTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAACCTGGCCCCGCCCGTCGCAATCCGTT‑TGTGAAAATTGAACCTTGTTGGCAGTCAAACCCGATCACCATACAAAGTGTACAGaa                                                                               <  2:1956996/149‑1 (MQ=255)

                                                                     aaTAGAATATTAAGCTAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑AGCTCTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa                                                                               <  1:1698854/149‑1 (MQ=255)

                                                                     aaTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa                                                                               >  1:1153935/1‑149 (MQ=255)

                                                                       tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGTCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACg                                                                             >  1:1865847/1‑149 (MQ=255)

                                                                         gAATATTAAGCCAACAAATAAACTGAAAACGTTTGTCCGCGATGCTTTCCTCTATGAGTCATAATGGACCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCTAACTCGTCTACAAAACAATGTGTACAGAACGAc                                                                           >  1:1248499/1‑149 (MQ=255)

                                                                         gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTACAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc                                                                           >  2:1247819/1‑149 (MQ=255)

                                                                          aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTACGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACt                                                                          >  2:1235281/1‑149 (MQ=255)

                                                                             atTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTATCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc                                                                       >  2:1353327/1‑149 (MQ=255)

                                                                              ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGccc                                                                      <  2:1971558/149‑1 (MQ=255)

                                                                              ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGccc                                                                      >  1:43780/1‑149 (MQ=255)

                                                                               tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCa                                                                     >  1:314982/1‑149 (MQ=255)

                                                                                  gCCAACAAATAAACTGAAAAAGGTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGt                                                                  <  2:1143220/149‑1 (MQ=255)

                                                                                      acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAt                                                              <  1:1163267/149‑1 (MQ=255)

                                                                                      acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAt                                                              <  2:1677399/149‑1 (MQ=255)

                                                                                        aaaTACACTGAAAAAGTTTGTCCGCGATGCTTTCATCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAttt                                                            <  1:935861/149‑1 (MQ=255)

                                                                                          aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAg                                                          >  1:581595/1‑149 (MQ=255)

                                                                                                tGACAAAGTTTGTCCACGATGGTTTTCTCTATGAGTCAACCTGCACTCGTGGCATTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAg                                                    <  1:973814/149‑1 (MQ=255)

                                                                                                tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAg                                                    <  1:1775570/149‑1 (MQ=255)

                                                                                                  aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGACAATATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtt                                                  >  1:1304666/1‑149 (MQ=255)

                                                                                                    aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttt                                                <  2:1753939/149‑1 (MQ=255)

                                                                                                     aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                               <  1:418479/149‑1 (MQ=255)

                                                                                                     aaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCACAATAGTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                               <  1:1173550/149‑1 (MQ=255)

                                                                                                     aaGTTTGGCCGCGATGCTTTCCTCGAGGAGGCAAAATGTCCCTAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGttttt                                               <  2:1109576/149‑1 (MQ=255)

                                                                                                      aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                              <  2:1749864/149‑1 (MQ=255)

                                                                                                             cctcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaagga                                       <  2:711583/146‑1 (MQ=255)

                                                                                                              cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                                      <  2:497427/149‑1 (MQ=255)

                                                                                                              cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                                      >  2:1567514/1‑149 (MQ=255)

                                                                                                              cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaa                                      >  1:1616697/1‑149 (MQ=255)

                                                                                                               gcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaa                                     <  2:1153935/149‑1 (MQ=255)

                                                                                                               accgtGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaa                                     <  2:803351/145‑1 (MQ=255)

                                                                                                                 gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagc                                   <  2:1894246/149‑1 (MQ=255)

                                                                                                                 gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagc                                   <  1:1341670/149‑1 (MQ=255)

                                                                                                                 gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGGTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAagc                                   <  1:986562/149‑1 (MQ=255)

                                                                                                                     cTTTCCTCGATGAGTCAAAGTGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAgcagca                               <  1:1431690/149‑1 (MQ=255)

                                                                                                                       ttCCTCTATGAGTCAAAATGGCCCCAAATGTTTA‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGGCGATTTAGAAATAGTTTTATGAAAGGAAAGCAGCATg                             >  1:1310834/1‑149 (MQ=255)

                                                                                                                        tCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTATAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGa                            <  1:240890/149‑1 (MQ=255)

                                                                                                                          ctctAGGAGTTAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGaaa                          <  2:774312/149‑1 (MQ=255)

                                                                                                                            ctATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAt                        <  1:1737812/149‑1 (MQ=255)

                                                                                                                             tATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAtt                       >  1:413830/1‑149 (MQ=255)

                                                                                                                              aTGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTa                      >  1:1083036/1‑149 (MQ=255)

                                                                                                                              aTGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTa                      <  2:716680/149‑1 (MQ=255)

                                                                                                                                gAGTCAAAATGGCCCCCAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGGCGATTTAGAAATAGTTTTTTGAACGAAAAGCAGCAGGAAAATTaaa                    >  1:971520/1‑149 (MQ=255)

                                                                                                                                  gTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTACAGTGTAGGAAGTCAAAAAAGATTCACAAGCAATGTATGCAGAACAAATGTTAATTTCGATTGACAAATTGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaaaa                  >  2:488134/1‑148 (MQ=255)

                                                                                                                                   tCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGGAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct                 >  2:8677/1‑149 (MQ=255)

                                                                                                                                            ccccAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATc        <  1:1052101/149‑1 (MQ=255)

                                                                                                                                             cccAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCGTGTCGATTTAGAAATAGTTTTTTGAAGGGGAAGCAGCATGAAAATTAGAACTCTGGCAATCg       >  1:1540400/1‑149 (MQ=255)

                                                                                                                                             cccAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCg       >  1:307751/1‑149 (MQ=255)

                                                                                                                                              ccAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgt      >  1:1428365/1‑149 (MQ=255)

                                                                                                                                               cAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgtt     >  1:1545951/1‑149 (MQ=255)

                                                                                                                                                  aTGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCgttgtt  <  2:1169403/149‑1 (MQ=255)

ACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTC‑ATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTT  >  NC_000913/4542851‑4543145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.