New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	955092 =	3 (0.050)	53 (0.930)	48/294	0.2	94.6%	coding (1541/1761 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_000913	= 1469240	NA (NA)					intergenic (‑91/‑1)	insC1/ydbA	IS2 repressor TnpA/pseudogene, autotransporter homolog; interrupted by IS2 and IS30

AATTAAAAGCCATGCTGGCGCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/955236‑955092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATC  <  NC_000913/1469240‑1469093                                                                                                                                                                                                                                                                                                       AATTAAAAGCCATGCTGGCGCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGA                                                                                                                                                  >  1:509479/1‑149   TTAAAAGCCATGCTGGCGCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACT                                                                                                                                                >  2:784617/1‑149    TAAAAGCCATGCTGGCGCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTCCTGGCTAGACgg                                                                                                                                               >  2:480436/1‑147     AAAAGCCATGCTGGCGCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTTTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTCCTGGCTAGACTGG                                                                                                                                              <  2:576921/149‑1      AAAGCCATGCTGGCGCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGC                                                                                                                                             >  2:794367/1‑149               CTGGCGCTGTCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCTAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAAT                                                                                                                                    <  2:40053/149‑1               CTGGCGCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAAT                                                                                                                                    >  1:434327/1‑149                  GCGCTGGCTGGTGGCGATCGGGAACAGGCTCGGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTC                                                                                                                                 <  1:857489/149‑1                    GCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCA                                                                                                                               >  1:218688/1‑149                        GCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACA                                                                                                                           >  1:780489/1‑149                          ggggGGCGAGCTGGAACAGGCTCTGGTCTGGACCGAATGGATGATGGAGTTTACCTCATCAGTATGTAGGCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTCTTACTGGCTAGACTGTCCCCCTGAATCTCCAGACAAC                                                                                                                         <  2:146215/145‑1                           GGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACC                                                                                                                        <  1:418046/149‑1                               GCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATA                                                                                                                    >  2:925787/1‑149                                 GATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                                                                  >  1:890754/1‑149                                                  GGTCTGGACCGAATGGACGATGGAGTTTAACTGATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGGTGGTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAGGTGATAG                                                                                                 >  2:134008/1‑149                                                      TGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTT                                                                                             >  1:921098/1‑149                                                        GACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAA                                                                                           <  1:849613/149‑1                                                         ACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAT                                                                                          >  2:674490/1‑149                                                           CGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC                                                                                        >  1:120760/1‑149                                                             AATGGACGATGGATTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTA                                                                                      <  1:661091/149‑1                                                                GGACGAAGGAGTTTAACTCAGCAGTATTTAGGCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCGGAAACTCCAGACAACCAATGTCACTTAAATAAGTGATAGTCTTAATACTAGTT                                                                                   <  2:126887/149‑1                                                                  ACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTT                                                                                 <  2:122643/149‑1                                                                    GATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                                                                               >  2:346123/1‑149                                                                    GATGGAGTTTAACTCATCAGTATTTAGGCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                                                                               <  2:866998/149‑1                                                                      TGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTTGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGA                                                                             >  1:39454/1‑149                                                                         cGTTTACCCCATCAGTATGTCGTCCGGAACGGGCCAACTATTATCGCTCCCTGCAAACGCTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTA                                                                          <  2:46641/148‑1                                                                                CTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG                                                                   <  2:780489/149‑1                                                                                 TCATCAGTATTTAGTCCTGAACGCGCCAACGATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCCCTTCCCTAAATGATAGTTTAAAGACTAGTTTTTAGACTAGTCATTGG                                                                  >  2:664090/1‑149                                                                                 TCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGG                                                                  >  2:603943/1‑149                                                                                   ATCAGTATTTAGCCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTCCTGGCTAGACTGGCCCCCTGAATCTTCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG                                                                <  1:279027/149‑1                                                                                    TCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGA                                                               >  1:572889/1‑149                                                                                     CAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA                                                              <  2:730705/149‑1                                                                                        TATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAG                                                           >  1:332794/1‑149                                                                                              GTCCGTTACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATT                                                     <  2:940009/149‑1                                                                                                   GAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGGGAAAAAATAATTGATGT                                                >  1:768065/1‑149                                                                                                   GAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCGTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAGGATTGATGT                                                >  1:920926/1‑149                                                                                                    AACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATTCTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAAGTt                                               >  1:330091/1‑148                                                                                                     ACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCT                                              <  1:603943/149‑1                                                                                                       cccCCAACTATCATCGCCGCCTGCCAACGTTGCTATTACTGGCTAGACCAGCCGCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTA                                            <  1:26136/146‑1                                                                                                       GCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTA                                            <  1:580910/149‑1                                                                                                         GCCAACTAGTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGG                                          <  1:288382/149‑1                                                                                                          tacACTATTATCGCTGCGTGCAAACGTTGGTATTACTGGCTAGACTGGCCTCCTGAACCCCCAGACCACCAATATCACTTAAATAAGTGATAGTCTTACGCCTAGTTTTTAGCCTAGTCATTGGAGAACAGATGATTGATGTCTTAGGG                                         <  2:606799/146‑1                                                                                                          CCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGCATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGGGAACAGATGATTGATGTGTTAGGG                                         >  1:116462/1‑149                                                                                                               TATTATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAAACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGA                                    <  1:649976/149‑1                                                                                                                  TATCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAGACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAA                                 <  2:297063/149‑1                                                                                                                   gTCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGGCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAA                                <  2:692522/148‑1                                                                                                                    TCGCTGCCTGCAAACGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAAC                               <  1:346123/149‑1                                                                                                                                atCGTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCGATATCACTTTAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGGCATTGGAGAACAGATGATTGATGTCTTTGGGCCGGAGAAACGCGGACGGCGTA                   <  2:115304/147‑1                                                                                                                                   GTTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCA                >  2:169532/1‑149                                                                                                                                    TTGTTATTACTGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCAC               <  2:332794/149‑1                                                                                                                                             cgGGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA      <  1:95490/147‑1                                                                                                                                                 CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGGCTTAATACTAGTTTTTAGACTAGTCATTGAAGAGCTGTGGATTGGTGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATC  <  1:135928/149‑1                                                                                                                                                 CTAGACTGGCCCCCTGAAGCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATC  <  2:895555/149‑1                                                                                                                                                                                                                                                                                                       AATTAAAAGCCATGCTGGCGCTGGCTGGTGGCGATCTGGAACAGGCTCTGGTCTGGACCGAATGGACGATGGAGTTTAACTCATCAGTATTTAGTCCGGAACGCGCCAACTATTATCGCTGCCTGCAAACGTTGTTATTACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/955236‑955092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATC  <  NC_000913/1469240‑1469093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.