New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3648347 =	54 (0.950)	4 (0.080)	4/272	8.3	7.3%	noncoding (55/84 nt)	agrB	antisense sRNA antitoxin for the DinQ toxin
	?	NC_000913	3648374 =	51 (0.970)					noncoding (82/84 nt)	agrB	antisense sRNA antitoxin for the DinQ toxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAG  >  NC_000913/3648199‑3648495                                                                                                                                                     |                                                                                                                                                     tCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTa                                                                                                                                                      >  1:836773/1‑149 (MQ=255)        tGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGACACTGGATAATAGTATTGAGCTGTTAGATAAGAGCTCCCTCACTCCAGCCAGAGCCGCCAACTCAGGGCTGGAAAGTaaaaaaac                                                                                                                                               >  1:56318/1‑147 (MQ=39)              atataCCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCa                                                                                                                                         >  2:751955/1‑149 (MQ=255)                    cGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg                                                                                                                                   >  2:445374/1‑149 (MQ=255)                    cGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg                                                                                                                                   <  1:445374/149‑1 (MQ=255)                       aGTGCTCCCTCCGCCAGCTTAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACTATAGCTGTGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtt                                                                                                                                <  1:228425/149‑1 (MQ=38)                         tGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtgtt                                                                                                                              >  2:546476/1‑149 (MQ=255)                           ctccctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtttttt                                                                                                                            >  2:710562/1‑149 (MQ=255)                               ctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGTATCCAGGAAACCGACGCAAAGTCGGTTTTTTTACg                                                                                                                        <  1:696727/149‑1 (MQ=38)                               ctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACg                                                                                                                        >  1:812627/1‑149 (MQ=255)                                 ccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTc                                                                                                                      <  2:799511/149‑1 (MQ=255)                                    ccAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTg                                                                                                                   >  1:413479/1‑149 (MQ=255)                                          gaagaaATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAg                                                                                                             >  1:519511/1‑149 (MQ=255)                                             gaaATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcc                                                                                                          >  2:807908/1‑149 (MQ=255)                                              aaaTCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcct                                                                                                         <  2:526022/149‑1 (MQ=255)                                                        ttCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAAt                                                                                               <  1:37602/149‑1 (MQ=255)                                                            tGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGCTAAGAACTCTCTCACTACAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAAt                                                                                           >  2:108067/1‑149 (MQ=255)                                                               aaTGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAGTCAGACCTCCTTTCAAATGAATAGc                                                                                        >  1:749761/1‑149 (MQ=255)                                                                 tattAGCCAGTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCCCCGTTCAAATGAATAGccc                                                                                      >  2:149601/3‑148 (MQ=255)                                                                 tGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAACAACTCTCTCACTCCAGCCAGAGCCACCAACTCACGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCa                                                                                      <  2:844291/149‑1 (MQ=255)                                                                 tGTTAGCCACTGGCTAATAGTATTGAGCTATTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTGAGACCTCCTTGCAAATGAATAGCCa                                                                                      >  1:575411/1‑149 (MQ=255)                                                                      gCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCa                                                                                 <  2:144226/149‑1 (MQ=255)                                                                         aCTGGCCAATAGTATTGAGCTGTTAGATAAGAACGCTCTCACTACAACCATAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaaa                                                                              <  1:217255/149‑1 (MQ=37)                                                                            ggttAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTc                                                                           <  2:535439/146‑1 (MQ=255)                                                                             gCTATTAGCATTGATGCGTTAGATAAGGACTATCTCACCCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTca                                                                          <  2:717623/149‑1 (MQ=17)                                                                              ccaaTAGTATTGGGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTcac                                                                         <  2:180214/147‑1 (MQ=255)                                                                               tAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTcaca                                                                        >  2:766919/1‑149 (MQ=255)                                                                                aaTAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCacac                                                                       <  1:233068/149‑1 (MQ=255)                                                                                       ttGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTAc                                                                <  1:751955/149‑1 (MQ=255)                                                                                        tGAGCTGGTACATAAGAACCCTCTCACTCCAGCCAGGGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTAcc                                                               <  2:890622/149‑1 (MQ=255)                                                                                             tGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAACCAACTCAAAATTCACACCTATTACCTTCct                                                          >  1:633754/1‑149 (MQ=255)                                                                                              gTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCctc                                                         <  2:771288/149‑1 (MQ=255)                                                                                                tAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTg                                                       <  2:923403/149‑1 (MQ=255)                                                                                                  gATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATGGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCa                                                     <  2:836773/149‑1 (MQ=255)                                                                                                   aTAAGAACTCTCTCACTCCAGCCTGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGTTTCAGACCTCCTATCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCctctaccc                                                    >  2:649564/1‑145 (MQ=255)                                                                                                   aTAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAGTCAGACCTCCTTTCAAATGAACAGCCAACTCAAAATTCACACCTATTACCGTCCTCTGCag                                                    >  1:32863/1‑148 (MQ=255)                                                                                                    tAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAGGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCCACTCAAAATTCACACCTATTACCTTCCTCTGCACt                                                   >  2:778476/1‑149 (MQ=255)                                                                                                        aaCTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTaca                                               <  1:117029/149‑1 (MQ=255)                                                                                                             tctcACTCCGGTCAGGGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc                                          <  1:740131/149‑1 (MQ=255)                                                                                                             tctcACTCCAGGCAGCGCCCCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAACTCACACCTATTACCTGCCTCTGCACTTACACATTc                                          <  1:134182/149‑1 (MQ=25)                                                                                                             tctcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc                                          <  1:674209/149‑1 (MQ=255)                                                                                                             tctcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTGCCTCTGCCATTACACAtac                                          >  1:144929/1‑147 (MQ=255)                                                                                                                   tCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAc                                                                                                           <  2:415790/78‑1 (MQ=255)                                                                                                                   tCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAg                                    >  2:821391/1‑149 (MQ=255)                                                                                                                      agccagAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCa                                 >  2:878706/1‑149 (MQ=255)                                                                                                                       gccagAGCCACCACCTCAGGGCTGGAAAGTAAAGAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCat                                <  2:714054/149‑1 (MQ=255)                                                                                                                          agagCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCatata                             >  2:898826/1‑149 (MQ=255)                                                                                                                           gagCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTCTATTTACCTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCatatat                            <  1:180578/149‑1 (MQ=255)                                                                                                                                accaACTCAGGGCTGGAAAGTAAAAACCAGCTGAAAATGCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGtttt                       >  2:440319/1‑149 (MQ=255)                                                                                                                                      tCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTATGCAGTTAACCATTCGTTAAGTAATATATGTTTTTGAttt                 >  1:324559/1‑149 (MQ=38)                                                                                                                                         gggCTGGAAAGTAAAAAACCCACGCAAAGTCTGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAATTCATATATGTTTTTGACTTATc              <  2:56318/149‑1 (MQ=255)                                                                                                                                                 aaatAAAAAACCGACGCAAAGTCGGTTTTTCTACGTCCCGATCCATACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCCCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGa      <  1:412591/146‑1 (MQ=255)                                                                                                                                                    tAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAaga   <  1:30786/149‑1 (MQ=255)                                                                                                                                                    tAAAAAACCGACGCAAAGTCGGTGTTTTTGCGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTAGTACCTTCCCCTGCACTTACACATTCGTTAAGTCCTATATGTTTTCGCCTTATCCGCTTCGAaga   >  2:12938/1‑149 (MQ=255)                                                                                                                                                     aaaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAagag  <  2:410023/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCGTCACTGCGATATATACCGAAGTGCTCCCTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAG  >  NC_000913/3648199‑3648495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.