New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3648116 =	55 (0.970)	4 (0.080)	4/272	8.3	7.3%	noncoding (55/84 nt)	agrA	inactive antisense sRNA
	?	NC_000913	3648374 =	51 (0.970)					noncoding (82/84 nt)	agrB	antisense sRNA antitoxin for the DinQ toxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGACACTACCTGCAACAATCAGG  >  NC_000913/3648229‑3648518                                                                                                                                                  |                                                                                                                                                 ctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGTATCCAGGAAACCGACGCAAAGTCGGTTTTTTTACg                                                                                                                                               <  1:696727/149‑1 (MQ=38) ctccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACg                                                                                                                                               >  1:812627/1‑149 (MQ=255)   ccGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTc                                                                                                                                             <  2:799511/149‑1 (MQ=255)      ccAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTg                                                                                                                                          >  1:413479/1‑149 (MQ=255)            gaagaaATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAg                                                                                                                                    >  1:519511/1‑149 (MQ=255)               gaaATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcc                                                                                                                                 >  2:807908/1‑149 (MQ=255)                aaaTCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAcct                                                                                                                                <  2:526022/149‑1 (MQ=255)                          ttCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAAt                                                                                                                      <  1:37602/149‑1 (MQ=255)                              tGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGCTAAGAACTCTCTCACTACAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAAt                                                                                                                  >  2:108067/1‑149 (MQ=255)                                 aaTGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAGTCAGACCTCCTTTCAAATGAATAGc                                                                                                               >  1:749761/1‑149 (MQ=255)                                   tattAGCCAGTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCCCCGTTCAAATGAATAGccc                                                                                                             >  2:149601/3‑148 (MQ=255)                                   tGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAACAACTCTCTCACTCCAGCCAGAGCCACCAACTCACGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCa                                                                                                             <  2:844291/149‑1 (MQ=255)                                   tGTTAGCCACTGGCTAATAGTATTGAGCTATTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTGAGACCTCCTTGCAAATGAATAGCCa                                                                                                             >  1:575411/1‑149 (MQ=255)                                        gCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCa                                                                                                        <  2:144226/149‑1 (MQ=255)                                           aCTGGCCAATAGTATTGAGCTGTTAGATAAGAACGCTCTCACTACAACCATAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCaaaa                                                                                                     <  1:217255/149‑1 (MQ=37)                                              ggttAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTc                                                                                                  <  2:535439/146‑1 (MQ=255)                                               gCTATTAGCATTGATGCGTTAGATAAGGACTATCTCACCCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTca                                                                                                 <  2:717623/149‑1 (MQ=17)                                                ccaaTAGTATTGGGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTcac                                                                                                <  2:180214/147‑1 (MQ=255)                                                 tAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTcaca                                                                                               >  2:766919/1‑149 (MQ=255)                                                  aaTAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCacac                                                                                              <  1:233068/149‑1 (MQ=255)                                                         ttGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTAc                                                                                       <  1:751955/149‑1 (MQ=255)                                                          tGAGCTGGTACATAAGAACCCTCTCACTCCAGCCAGGGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTAcc                                                                                      <  2:890622/149‑1 (MQ=255)                                                               tGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAACCAACTCAAAATTCACACCTATTACCTTCct                                                                                 >  1:633754/1‑149 (MQ=255)                                                                gTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCctc                                                                                <  2:771288/149‑1 (MQ=255)                                                                  tAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTg                                                                              <  2:923403/149‑1 (MQ=255)                                                                    gATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATGGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCa                                                                            <  2:836773/149‑1 (MQ=255)                                                                     aTAAGAACTCTCTCACTCCAGCCTGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGTTTCAGACCTCCTATCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCctctaccc                                                                           >  2:649564/1‑145 (MQ=255)                                                                     aTAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGAGTCAGACCTCCTTTCAAATGAACAGCCAACTCAAAATTCACACCTATTACCGTCCTCTGCag                                                                           >  1:32863/1‑148 (MQ=255)                                                                      tAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAGGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCCACTCAAAATTCACACCTATTACCTTCCTCTGCACt                                                                          >  2:778476/1‑149 (MQ=255)                                                                          aaCTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTaca                                                                      <  1:117029/149‑1 (MQ=255)                                                                               tctcACTCCGGTCAGGGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc                                                                 <  1:740131/149‑1 (MQ=255)                                                                               tctcACTCCAGGCAGCGCCCCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAACTCACACCTATTACCTGCCTCTGCACTTACACATTc                                                                 <  1:134182/149‑1 (MQ=25)                                                                               tctcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTc                                                                 <  1:674209/149‑1 (MQ=255)                                                                               tctcACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTGCCTCTGCCATTACACAtac                                                                 >  1:144929/1‑147 (MQ=255)                                                                                     tCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGAc                                                                                                                                  <  2:415790/78‑1 (MQ=255)                                                                                     tCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAg                                                           >  2:821391/1‑149 (MQ=255)                                                                                        agccagAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCa                                                        >  2:878706/1‑149 (MQ=255)                                                                                         gccagAGCCACCACCTCAGGGCTGGAAAGTAAAGAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCat                                                       <  2:714054/149‑1 (MQ=255)                                                                                            agagCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCatata                                                    >  2:898826/1‑149 (MQ=255)                                                                                             gagCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTCTATTTACCTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCatatat                                                   <  1:180578/149‑1 (MQ=255)                                                                                                  accaACTCAGGGCTGGAAAGTAAAAACCAGCTGAAAATGCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGtttt                                              >  2:440319/1‑149 (MQ=255)                                                                                                        tCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTATGCAGTTAACCATTCGTTAAGTAATATATGTTTTTGAttt                                        >  1:324559/1‑149 (MQ=38)                                                                                                           gggCTGGAAAGTAAAAAACCCACGCAAAGTCTGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAATTCATATATGTTTTTGACTTATc                                     <  2:56318/149‑1 (MQ=255)                                                                                                                   aaatAAAAAACCGACGCAAAGTCGGTTTTTCTACGTCCCGATCCATACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCCCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGa                             <  1:412591/146‑1 (MQ=255)                                                                                                                      tAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAaga                          <  1:30786/149‑1 (MQ=255)                                                                                                                      tAAAAAACCGACGCAAAGTCGGTGTTTTTGCGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTAGTACCTTCCCCTGCACTTACACATTCGTTAAGTCCTATATGTTTTCGCCTTATCCGCTTCGAaga                          >  2:12938/1‑149 (MQ=255)                                                                                                                       aaaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAagag                         <  2:410023/149‑1 (MQ=255)                                                                                                                        aaaaaCCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAagaga                        >  1:174960/1‑149 (MQ=255)                                                                                                                            cccGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGaca                    <  1:872152/148‑1 (MQ=255)                                                                                                                             ccGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGacac                   <  2:343154/149‑1 (MQ=255)                                                                                                                              cGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATCTATCTTTCGGACTTATCCGCTTCGAAGAGAGACACt                  <  1:697165/149‑1 (MQ=255)                                                                                                                                       gTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGACACTACCTGcaac         <  1:440319/149‑1 (MQ=255)                                                                                                                                       gTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGACACTACCTGcaac         <  1:116076/149‑1 (MQ=255)                                                                                                                                           gTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGACACTACCTGca           >  1:894192/1‑143 (MQ=255)                                                                                                                                           gTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGACACTACCTGca           <  2:894192/143‑1 (MQ=255)                                                                                                                                              tttttACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAGCTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGACACTACCTGCAACAATCAgg  >  1:84328/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CTCCGCCAGCTGAAGAAATCGCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGATTCAGACCTCCTTTCAAATGAATAGCCAACTCAAAATTCACACCTATTACCTTCCTCTGCACTTACACATTCGTTAAGTCATATATGTTTTTGACTTATCCGCTTCGAAGAGAGACACTACCTGCAACAATCAGG  >  NC_000913/3648229‑3648518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.