New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3946687	71 (1.450)	7 (0.150)	5/282	5.9	9.3%	intergenic (+81/‑12)	rrlC/rrfC	23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
	?	NC_000913	= 4171600	NA (NA)					intergenic (+57/‑36)	rrlB/rrfB	23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG  >  NC_000913/4171499‑4171714                                                                                                      |                                                                                                                   aTGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCa                                                                     >  1:645038/1‑149 (MQ=11)         aGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGGAGTAGcgcg                                                             >  1:577473/1‑149 (MQ=17)         aGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTcgcgcg                                                             >  2:744650/1‑149 (MQ=17)           cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCggt                                                           >  2:466847/1‑149 (MQ=32)                 ggTACTAATGAACGGTGAGGCTTAACCGTACAACGCCGAAGCTGTTTTGGCGGATGAGAGGAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGGCTGGCGGCAGTAGCGCGGTGGTccc                                                     <  1:458780/149‑1 (MQ=255)                   tACTAATGAACCGGGAGGCTTAACCTTACAACCCAGACACTGTGTTGGTCTATTAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc                                                   <  2:172139/149‑1 (MQ=11)                      tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGACGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTg                                                >  1:805611/1‑149 (MQ=17)                      tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAACCAGAATTTGCCTGGCGGCAATAGCGCGGTGTTCCCACCTg                                                >  1:29398/1‑149 (MQ=12)                      tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTg                                                >  1:792136/1‑149 (MQ=32)                          gAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAccc                                            <  1:83804/149‑1 (MQ=32)                             ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCACAAATACTGTCGGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCCCCTGACCCCAt                                         >  1:394662/1‑149 (MQ=11)                               gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTTGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGc                                       <  2:415098/149‑1 (MQ=17)                               gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGCGAGAAGAATATCACCCTAATACATTTTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGc                                       <  1:360183/149‑1 (MQ=11)                               gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGc                                       <  2:704003/149‑1 (MQ=32)                                tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGcc                                      <  1:255986/149‑1 (MQ=32)                                   ggCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTCTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa                                   <  2:389649/149‑1 (MQ=17)                                    gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGGTGAGAGAAGATTTTCAGCCTGATAATGGTTAAATCAGAACGCTGGTTCTGGCTGTTAAAACAGAATTAGCCAGGCGCCATTTTCGCGGTGGTCGCACCGGAGCCCATGCCGAAc                                  >  1:804538/1‑149 (MQ=2)                                      ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATATTCATCCTTATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc                                >  1:116782/1‑149 (MQ=12)                                            ttACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAAATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCATGGCGCCATAAGCGCGGTGGTGCCACCTGACCACATGCCGAACTCAGGAga                          >  1:153634/1‑148 (MQ=11)                                            tcagaaCGCGGCAGCGGTTTGGGCGGAGGAGAGAAGACTGTCAGCCTGATACAGCTTACATCAGAACGCAGAAGTGGTCTGATAAAACCGACGTTGCCTGGCGGCAGGGGCGCGGTGGTCCCACCTGACCCCATGCCGGACTCAGAAGt                          <  2:362497/145‑1 (MQ=11)                                              aCAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTCCATGGCTGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAgggc                        >  1:189819/1‑146 (MQ=255)                                                aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAAAGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCGACCTGACCCCATGCCGAACTCCGAAGGGaca                      >  1:550557/1‑147 (MQ=255)                                                   gCCGAAGCTGTTTTGGCGGATGAGCGCCGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGc                   >  1:809433/1‑149 (MQ=12)                                                           tGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAAGCCGACCTCAAAAGTGAAGCGCCGAAgcgc           >  2:171001/1‑149 (MQ=11)                                                             ttttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgcag         >  1:367139/1‑147 (MQ=17)                                                                tGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATg      <  1:168574/149‑1 (MQ=32)                                                                    ggATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAAGGTAg  >  1:158148/1‑149 (MQ=17)                                                                                                      |                                                                                                                   ATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG  >  NC_000913/4171499‑4171714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.