New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3315699 =	43 (1.050)	3 (0.080)	3/266	NT	7.0%	coding (314/2673 nt)	infB	translation initiation factor IF‑2
	?	NC_000913	3315729 =	38 (0.960)					coding (284/2673 nt)	infB	translation initiation factor IF‑2

CGCAGCTTCACGTTTCGCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAGGAATGTTAAGGGTGCTGCGTGTTTTACGTTGCAGCGTCAATTTGTCCG  >  NC_000913/3315554‑3315846                                                                                                                                                  |                                                                                                                                                    cGCAGCTTCACGTTTCGCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCg                                                                                                                                                  >  1:118894/1‑149 (MQ=255) cGCAGCTTCACGTTTCGCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTGCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGTGCTTGCTCTTCCg                                                                                                                                                  <  1:498793/149‑1 (MQ=255)  gCAGCCTCACGTTTGGCTTGTTCAGCAGCTTCCCGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGc                                                                                                                                                 <  2:281315/149‑1 (MQ=255)        tCACGTTTCGCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAg                                                                                                                                           >  1:194408/1‑149 (MQ=255)        tCACGTTTCGCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTACGGCCTCACGATCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAg                                                                                                                                           >  1:25064/1‑149 (MQ=255)             tttGGCTTGTTCAGCCGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGtt                                                                                                                                      <  2:137019/149‑1 (MQ=255)             tttCGCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGtt                                                                                                                                      <  1:150564/149‑1 (MQ=255)             tttCGCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGtt                                                                                                                                      >  1:589903/1‑149 (MQ=255)                 gCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGc                                                                                                                                  <  2:166955/149‑1 (MQ=255)                    tGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCACGGCGTTCAGCctc                                                                                                                               >  2:422125/1‑149 (MQ=255)                         agcagcTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCg                                                                                                                          >  1:730631/1‑149 (MQ=255)                          gcagcTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCgg                                                                                                                         <  1:103839/149‑1 (MQ=255)                             gcTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCGGCGCTTGCTCTTCTGCTGCAAGGCGTTTATGCTCTTGCggttg                                                                                                                      >  2:290114/1‑146 (MQ=255)                             cgacaaattgacgctgcaacgtaaaacacgcagcaccctgaacattcctggtaccggtggaaaaagcaaatcggtacaaatcgaagtccgcaagaaacgcacctttgtgaaacgcgaTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATc                                                                                                                      >  2:27337‑M1/118‑149 (MQ=255)                                   cGCTTAGCTTGTTCTGCGGCCTCTCGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGACTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGttt                                                                                                                >  1:405817/1‑149 (MQ=255)                                          cTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAg                                                                                                         >  1:289081/1‑149 (MQ=255)                                          cTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAg                                                                                                         >  2:703561/1‑149 (MQ=255)                                            tGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGt                                                                                                       <  2:654423/149‑1 (MQ=255)                                            tGTTCTGCGGCCTCACGTTCAGCTTTTTGTTCGCCCTCTGGTGTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTGCACAAAGGt                                                                                                       >  2:520657/1‑149 (MQ=255)                                            gcaacgtaaaacacgcagcacccttaacattcctggtaccggtggaaaaagcaaatcggtacaaatcgaagtccgcaagaaacgcacctttgtgaaacgcgaTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGt                                                                                                                  <  2:591029‑M1/36‑1 (MQ=255)                                            gcaacgtaaaacacgcagcacccttaacattcctggtaccggtggaaaaagcaaatcggtacaaatcgaagtccgcaagaaacgcacctttgtgaaacgcgaTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGt                                                                                                                  >  1:591029‑M1/103‑138 (MQ=255)                                               tCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCg                                                                                                    >  1:540998/1‑149 (MQ=255)                                               tCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCg                                                                                                    >  1:540999/1‑149 (MQ=255)                                                  gCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGttt                                                                                                 <  2:381488/149‑1 (MQ=255)                                                      ccTCCCGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGGTTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTg                                                                                             <  2:170310/149‑1 (MQ=255)                                                        tctcGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCg                                                                                           <  2:373723/146‑1 (MQ=255)                                                        tCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCg                                                                                           <  2:189430/149‑1 (MQ=255)                                                         cACGTTCCGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCgg                                                                                          <  2:573146/149‑1 (MQ=255)                                                                 gCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCTCGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTCCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGAt                                                                                  <  2:118894/149‑1 (MQ=255)                                                                  cTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGAtt                                                                                 <  1:4756/149‑1 (MQ=255)                                                                  cTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGAtt                                                                                 <  1:4830/149‑1 (MQ=255)                                                                         ttgCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCCCGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCCTTCCAATCTCGATTCACACAGGTGCGATTGTTGCGGGCTTCGATTTGTACCg                                                                          >  1:167961/1‑149 (MQ=255)                                                                                tCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCt                                                                   <  1:674987/149‑1 (MQ=255)                                                                                  gcgTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCttt                                                                 <  2:730631/149‑1 (MQ=255)                                                                                         gCCGTTTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCAcc                                                          <  1:131014/149‑1 (MQ=255)                                                                                          ccGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCg                                                         <  1:344112/149‑1 (MQ=255)                                                                                            gATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGt                                                       >  1:490735/1‑149 (MQ=255)                                                                                            gATTCTTCTGCCTCACGACGGGCTTCCTATTCCGCTTCACGCTGCGCCTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGCTTTGCTTTTTCCACCGGt                                                       >  1:411485/1‑149 (MQ=255)                                                                                                cttctGCCTCGCGACGGGCTTGCTCTTCCGCTTCACGCTTCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCGTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTGCGATTTGTACCGATTTGCTTTTTCCACCGGTACCa                                                   <  2:79852/149‑1 (MQ=255)                                                                                                 ttctGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAg                                                  >  2:406379/1‑149 (MQ=255)                                                                                                 ttctGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAg                                                  <  2:13135/149‑1 (MQ=255)                                                                                                 ttctGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATCTGCTTTTTCCACCGGTCCCAg                                                  >  2:424024/1‑149 (MQ=255)                                                                                                     gCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAGGAAt                                              <  1:415642/149‑1 (MQ=255)                                                                                                          acgacgGGCTTGCTCTTCCGCTTCACGCTGCGCTTCCCCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTCCTTGCGCACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAGGAATGTTaa                                         <  1:62795/149‑1 (MQ=255)                                                                                                                       tctTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGTTTTGCTTTTTCCACCGGTACCAGGAATGTTAAGGGTGCTGCgtgt                            <  1:465481/149‑1 (MQ=255)                                                                                                                          tCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAGGCATGTTAAGGGTGCTGCGTGtttt                         >  1:634201/1‑149 (MQ=255)                                                                                                                          tCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTCGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAGGAATGTTAAGGGTGCTGCGTGtttt                         <  1:376974/149‑1 (MQ=255)                                                                                                                                         gcTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGCTCGCGTTTCCAAAAGATGCGTTTCTTCCGGACTCCGATTTGTACCGATTTGCTTTTTCCACCGGTGCCAGGGATGTCAAGGCTGCTTCGTGCTTTCAGTTGCAGCGTGaa          >  2:641297/1‑149 (MQ=255)                                                                                                                                         gcTTGCTCTTCCGCTGCAAGGCGATCAGTCTCTTCCGGATCGCGTTTCACAAAAGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAGGAATGTTAAGGGTGCTGCGTGTTTTTCGTTGCAGCGTCaa          >  1:403012/1‑149 (MQ=255)                                                                                                                                              ctctTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGCTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAGGAATGTTAAGGGTGCTGCGTGTTTTACGTTGCAGCGTCAATTTGt     <  1:241833/149‑1 (MQ=255)                                                                                                                                                 ttCCGCTGCAAGGCGTTCATCCTCGTGCGGATCGCGTTTCACAAAGGTGCGCTTCCTGCGCACTTCGATTTGTACCGAGTGGCTTTTTCCACCGGTACCAGGACTGTTAAGCGCGCTGAGCGTTCTACGTTGCAGCGGCAAGTTGcccc  >  2:387089/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CGCAGCTTCACGTTTCGCTTGTTCAGCAGCTTCACGCTTAGCTTGTTCTGCGGCCTCACGTTCAGCTTTTTGTTGCGCCTCGCGTTTAGCCGATTCTTCTGCCTCACGACGGGCTTGCTCTTCCGCTTCACGCTGCGCTTGCTCTTCCGCTGCAAGGCGTTCAGCCTCTTGCGGATCGCGTTTCACAAAGGTGCGTTTCTTGCGGACTTCGATTTGTACCGATTTGCTTTTTCCACCGGTACCAGGAATGTTAAGGGTGCTGCGTGTTTTACGTTGCAGCGTCAATTTGTCCG  >  NC_000913/3315554‑3315846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.