New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4486252 =99 (0.810)3 (0.030) 3/236 NT 3.3% coding (35/1101 nt) lptF lipopolysaccharide export ABC permease
?NC_000913 4486291 = 84 (0.730)coding (74/1101 nt) lptF lipopolysaccharide export ABC permease
Rejected: Frequency below/above cutoff threshold.

Only 100 of 119 total aligned reads displayed.

GTTGAGTATAATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTGGGCGTGCCGGAAATGGCGCAG  >  NC_000913/4486104‑4486400
                                                                                                                                                    |                                                                                                                                                    
atcagcagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagat                                                                                                                                                      >  3:397606‑M1/149‑149 (MQ=255)
atcagcagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagat                                                                                                                                                      >  4:922103‑M1/149‑149 (MQ=255)
 tcagcagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTc                                                                                                                                                     <  2:17340‑M1/2‑1 (MQ=255)
 tcagcagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTc                                                                                                                                                     <  2:872525‑M1/2‑1 (MQ=255)
 tcagcagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTc                                                                                                                                                     <  1:315141‑M1/2‑1 (MQ=255)
  tGAGTATAATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCa                                                                                                                                                    <  1:1046140/149‑1 (MQ=255)
  cagcagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTCa                                                                                                                                                    <  3:825017‑M1/3‑1 (MQ=255)
   agcagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaACaa                                                                                                                                                   <  2:1069637‑M1/4‑1 (MQ=255)
     gagcccgaggaccaggcttaatggcaggataagctgcaccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatagcgccgtaaaccgctacgccgagtatcctcactaacttttgacagaagatgcTCaaaa                                                                                                                                                 >  2:44646‑M1/144‑149 (MQ=255)
     gTATAATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCaaaa                                                                                                                                                 <  4:179481/149‑1 (MQ=255)
     cagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTCaaaa                                                                                                                                                 >  3:77355‑M1/144‑149 (MQ=255)
     cagcccgaggaacaggcttaatggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTCaaaa                                                                                                                                                 >  3:354378‑M1/144‑149 (MQ=255)
     cagcccgaggaacaggcttaagggcaggataagctgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTCaaaa                                                                                                                                                 >  4:825017‑M1/144‑149 (MQ=255)
      tataATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAg                                                                                                                                                >  4:192579/1‑149 (MQ=255)
      tataATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAg                                                                                                                                                >  1:1069637/1‑149 (MQ=255)
        taATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGACATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGcc                                                                                                                                              >  2:335758/1‑149 (MQ=255)
           ttATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGc                                                                                                                                           >  2:46995/1‑149 (MQ=255)
              tCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTgg                                                                                                                                        <  3:191090/149‑1 (MQ=255)
               cTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGc                                                                                                                                       <  2:1088211/149‑1 (MQ=255)
                     gacgaTTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATAct                                                                                                                                 >  4:469030/1‑149 (MQ=255)
                     gacgaTTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATAct                                                                                                                                 >  3:721965/1‑149 (MQ=255)
                            tCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATc                                                                                                                          <  1:335758/149‑1 (MQ=255)
                                   cTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCttt                                                                                                                   <  1:60387/149‑1 (MQ=255)
                                    tCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGGCGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCtttt                                                                                                                  >  2:180727/1‑149 (MQ=255)
                                      aaGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAATATATCTGGTGCGAGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGa                                                                                                                <  4:1010865/149‑1 (MQ=255)
                                      aaGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGa                                                                                                                <  2:814763/149‑1 (MQ=255)
                                      aaGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGa                                                                                                                >  4:291329/1‑149 (MQ=255)
                                      aaGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGa                                                                                                                >  2:934622/1‑149 (MQ=255)
                                      aaGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGa                                                                                                                >  3:1020390/1‑149 (MQ=255)
                                       tgcgccatttccggcacgcccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAt                                                                                                               >  4:720742‑M1/110‑149 (MQ=255)
                                       agagAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAt                                                                                                               >  1:529951/1‑149 (MQ=255)
                                        gagaATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtc                                                                                                              >  4:247890/1‑149 (MQ=255)
                                        gagaATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtc                                                                                                              <  1:595609/149‑1 (MQ=255)
                                           aaTAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCaaaa                                                                                                                                                 >  1:796595/1‑111 (MQ=255)
                                           aaTAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCaaaa                                                                                                                                                 <  2:796595/111‑1 (MQ=255)
                                           aaTAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtcttc                                                                                                           >  1:309902/1‑149 (MQ=255)
                                             tAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtcttctt                                                                                                         <  3:247890/149‑1 (MQ=255)
                                               aaTGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtcttcttct                                                                                                       <  1:1025724/149‑1 (MQ=255)
                                                aTGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTg                                                                                                      >  4:1106463/1‑149 (MQ=255)
                                                 tGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGt                                                                                                     <  4:721965/149‑1 (MQ=255)
                                                      tttAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCaaaa                                                                                                >  2:245968/1‑149 (MQ=255)
                                                      tttAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCaaaa                                                                                                <  4:859479/149‑1 (MQ=255)
                                                      tttAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCaaaa                                                                                                >  1:758788/1‑149 (MQ=255)
                                                         aaGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGtt                                                                                             <  3:604971/149‑1 (MQ=255)
                                                          ccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtc                                                                                                              <  3:53256‑M1/41‑1 (MQ=255)
                                                          ccaacccgagaagggagagcaccagattcgccggaatatcgccgtcaaccgctgcgccgaggatcctcactaacttttgacagaagaagaTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtc                                                                                                              >  4:53256‑M1/91‑131 (MQ=255)
                                                          aGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGGCGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTa                                                                                            <  1:180727/149‑1 (MQ=255)
                                                            ccATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGt                                                                                          <  3:339028/149‑1 (MQ=255)
                                                            ccATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGt                                                                                          >  3:190140/1‑149 (MQ=255)
                                                              aTGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGt                                                                                          <  1:427127/147‑1 (MQ=255)
                                                              aTGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGa                                                                                        >  2:755706/1‑149 (MQ=255)
                                                                gAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAgg                                                                                      <  4:190140/149‑1 (MQ=255)
                                                                gAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAgg                                                                                      <  3:192579/149‑1 (MQ=255)
                                                                   aCAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATc                                                                                   <  2:529951/149‑1 (MQ=255)
                                                                       gCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCg                                                                               <  2:1134368/149‑1 (MQ=255)
                                                                       gCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCg                                                                               >  3:287796/1‑149 (MQ=255)
                                                                       gCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCg                                                                               >  3:470580/1‑149 (MQ=255)
                                                                         tAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGgc                                                                             >  1:782818/1‑149 (MQ=255)
                                                                         tAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGgc                                                                             >  4:867715/1‑149 (MQ=255)
                                                                                cTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtcttc                                                                                                           >  3:1014603/1‑112 (MQ=255)
                                                                                cTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGAtcttc                                                                                                           <  4:1014603/112‑1 (MQ=255)
                                                                                    aaaaGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGa                                                                  >  2:2346/1‑149 (MQ=255)
                                                                                    aaaaGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGa                                                                  <  2:548955/149‑1 (MQ=255)
                                                                                      aaGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACg                                                                >  3:76431/1‑149 (MQ=255)
                                                                                      aaGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACg                                                                >  1:1142921/1‑149 (MQ=255)
                                                                                       aGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACgg                                                               >  1:555808/1‑149 (MQ=255)
                                                                                         aCGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCg                                                             >  1:1038148/1‑149 (MQ=255)
                                                                                          cGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGa                                                            <  1:46995/149‑1 (MQ=255)
                                                                                          cGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGa                                                            <  4:445607/149‑1 (MQ=255)
                                                                                              tttttACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATAtt                                                        >  3:734153/1‑149 (MQ=255)
                                                                                              tttttACGGGCGTATTTAAAGGGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATCctct                                                                                                                               <  4:882951/78‑1 (MQ=255)
                                                                                                  tACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCgg                                                    <  1:1149329/149‑1 (MQ=255)
                                                                                                     gggCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGa                                                 >  1:17340/1‑149 (MQ=255)
                                                                                                         gTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCt                                             >  1:413956/1‑149 (MQ=255)
                                                                                                            tttAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGt                                          >  1:600182/1‑149 (MQ=255)
                                                                                                               aaaGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGct                                       >  3:328711/1‑149 (MQ=255)
                                                                                                                     aTAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCt                                 >  3:955137/1‑149 (MQ=255)
                                                                                                                       aaTCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTtc                               >  1:872525/1‑149 (MQ=255)
                                                                                                                         tCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTtctc                             >  1:149851/1‑149 (MQ=255)
                                                                                                                           aTAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCgg                           <  2:555808/149‑1 (MQ=255)
                                                                                                                            tAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCggg                          >  3:289062/1‑149 (MQ=255)
                                                                                                                             aaGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTg                                         <  4:194896/133‑1 (MQ=255)
                                                                                                                             aaGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGt                         >  2:590476/1‑149 (MQ=255)
                                                                                                                              aGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGtt                        <  2:1038148/149‑1 (MQ=255)
                                                                                                                              aGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGtt                        >  3:140938/1‑149 (MQ=255)
                                                                                                                               gATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTg                       <  4:681004/149‑1 (MQ=255)
                                                                                                                                atatCTGGTGCGGGAGACGCTCAAAAGCCAGCTAGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGGATCTGGTGCTCTCCCTTCTCGGGtt                        <  3:129187/147‑1 (MQ=255)
                                                                                                                                 tatCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTggg                     <  2:1142921/149‑1 (MQ=255)
                                                                                                                                  atCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTGGGc                    <  4:140938/149‑1 (MQ=255)
                                                                                                                                         gCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGtt                                                                    >  3:1000873/1‑94 (MQ=255)
                                                                                                                                         gCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGtt                                                                    <  4:1000873/94‑1 (MQ=255)
                                                                                                                                           gggAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTg                                                                                                                 <  1:792965/47‑1 (MQ=255)
                                                                                                                                           gggAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTg                                                                                                                 >  2:792965/1‑47 (MQ=255)
                                                                                                                                            ggAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTGGGCGTGCCGGaaa          <  4:734153/149‑1 (MQ=255)
                                                                                                                                             gagaCGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAg                                                                                           <  3:407698/67‑1 (MQ=255)
                                                                                                                                             gagaCGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAg                                                                                           >  4:407698/1‑67 (MQ=255)
                                                                                                                                             gagaCGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTGGGCGTGCCGGAAAt         >  1:1066973/1‑149 (MQ=255)
                                                                                                                                              agaCGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTGGGCGTGCCGGAAATg        <  2:758788/149‑1 (MQ=255)
                                                                                                                                                  gCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTGGGCGTGCCGGAAATGgcgc    >  4:411365/1‑149 (MQ=255)
                                                                                                                                                    TCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTGGGCGTGCCGGAAATGGCGCAg  <  1:1093718‑M1/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GTTGAGTATAATTATCTTAGCGACGATTTCGACGACTCAAGAGAATAAATGACGTTTAAGCCATGAAACAAGCTAAAATCCTGCAAAAGACGAGTTTTTACGGGCGTATTTAAAGTGATAATCATAAGATATCTGGTGCGGGAGACGCTCAAAAGCCAGCTGGCGATACTCTTCATCTTGCTTTTGATCTTCTTCTGTCAAAAGTTAGTGAGGATCCTCGGCGCAGCGGTTGACGGCGATATTCCGGCGAATCTGGTGCTCTCCCTTCTCGGGTTGGGCGTGCCGGAAATGGCGCAG  >  NC_000913/4486104‑4486400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.