New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3621553	NA (NA)	3 (0.030)	3/238	NT	100%	coding (2362/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	= 3621603	0 (0.000)					coding (2412/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

AGACGGTGCATCACCCGCAGACGGAAGCACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCGCAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGAAACGCTGCGCAGCTTCGGCCGTTATGAACTCACCACCGCTTATACCCCTGCCGGGCAGTTACAGAGCCAGCACCTGAACAGCCTGCTGTCTG  >  NC_000913/3621455‑3621751                                                                                                                                                     |                                                                                                                                                     aGACGGTGCATCACCCGCAGACGGAAGCACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCGCAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGC                                                                                                                                                      <  1:1110663‑M2/149‑1 (MQ=255) aGACGGTGCATCACCCGCAGACGGAAGCACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCGCAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGC                                                                                                                                                      <  3:622354‑M2/149‑1 (MQ=255) aGACGGTGCATCACCCGCAGACGGAAGCACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCGCAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGC                                                                                                                                                      >  1:881340‑M2/1‑149 (MQ=255) aGACGGTGCATCACCCGCAGACGGAAGCACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCGCAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGC                                                                                                                                                      >  2:167039‑M2/1‑149 (MQ=255)                                                                                                   aGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtc                                                    <  3:902969‑M2/149‑99 (MQ=255)                                                                                                      cTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctga                                                 <  2:184400‑M2/149‑102 (MQ=255)                                                                                                         cccGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgc                                              >  4:902969‑M2/1‑45 (MQ=255)                                                                                                                                               ggCAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatac                <  4:164155‑M2/141‑135 (MQ=255)                                                                                                                                               ggCAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatac                >  3:164155‑M2/1‑7 (MQ=255)                                                                                                                                                gCAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgc       >  2:400761‑M2/1‑6 (MQ=255)                                                                                                                                                gCAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcggg                                                                >  3:297434‑M2/1‑6 (MQ=255)                                                                                                                                                gCAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcggg                                                                <  4:297434‑M2/92‑87 (MQ=255)                                                                                                                                                 cAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgca      >  1:41298‑M2/1‑5 (MQ=255)                                                                                                                                                 cAGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgaatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgca      <  4:935461‑M2/149‑145 (MQ=255)                                                                                                                                                  aGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcac     <  1:920638‑M2/149‑146 (MQ=255)                                                                                                                                                  aGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcac     <  3:747087‑M2/149‑146 (MQ=255)                                                                                                                                                  aGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcac     >  3:1088092‑M2/1‑4 (MQ=255)                                                                                                                                                  aGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcac     >  4:937540‑M2/1‑4 (MQ=255)                                                                                                                                                  aGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcac     <  4:999592‑M2/149‑146 (MQ=255)                                                                                                                                                  aGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctca                      <  4:552459‑M2/132‑129 (MQ=255)                                                                                                                                                  aGGCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctca                      >  3:552459‑M2/1‑4 (MQ=255)                                                                                                                                                   ggCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcacc    >  2:881340‑M2/1‑3 (MQ=255)                                                                                                                                                   ggCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcacc    <  3:902593‑M2/149‑147 (MQ=255)                                                                                                                                                   ggCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcacc    >  2:304934‑M2/1‑3 (MQ=255)                                                                                                                                                   ggCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcacc    <  4:1071809‑M2/149‑147 (MQ=255)                                                                                                                                                    gCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcaccg   <  3:486901‑M2/149‑148 (MQ=255)                                                                                                                                                    gCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcaccg   <  2:382453‑M2/149‑148 (MQ=255)                                                                                                                                                    gCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcaccg   >  1:345252‑M2/1‑2 (MQ=255)                                                                                                                                                    gCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctca                      >  2:256732‑M2/1‑2 (MQ=255)                                                                                                                                                    gCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctca                      <  1:256732‑M2/130‑129 (MQ=255)                                                                                                                                                    gCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgat                                                            <  3:566541‑M2/92‑91 (MQ=255)                                                                                                                                                    gCtgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgat                                                            >  4:566541‑M2/1‑2 (MQ=255)                                                                                                                                                    gCtgtccggtatacaacagttcgcgagcccttgcgagttgtacgcatgtctggtctcatgctgccagatcagtgattccgtctgcgggtaatgcaccgtctgacgctcaccggtcagccagctgttctcatcatacctgtaatgcaccg   <  4:710003‑M2/149‑148 (MQ=255)                                                                                                                                                     ctgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcaccgc  >  3:536203‑M2/1‑1 (MQ=255)                                                                                                                                                     ctgtccggtatacagcggttcgccagcccctgcgcgttgtacgcatgtctggtctcatgctgccagagcagtgcttccgtctgcgggtgatgcaccgtctgacgctcaccggtcagccggcctttctcatcatacctgtaatgcaccgc  <  3:107476‑M2/149‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGACGGTGCATCACCCGCAGACGGAAGCACTGCTCTGGCAGCATGAGACCAGACATGCGTACAACGCGCAGGGGCTGGCGAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACCTACGGCAGCGGTTACCTGGCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGAAACGCTGCGCAGCTTCGGCCGTTATGAACTCACCACCGCTTATACCCCTGCCGGGCAGTTACAGAGCCAGCACCTGAACAGCCTGCTGTCTG  >  NC_000913/3621455‑3621751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.