| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,002,332 | A→G | 15.6% | R425R (CGT→CGC) | fliC ← | flagellar filament structural protein (flagellin) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,002,332 | 0 | A | G | 15.6% | 2016.0 / 313.6 | 790 | R425R (CGT→CGC) | fliC | flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base A (363/303); new base G (65/59); total (428/362) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.76e-01 | |||||||||||
Only 100 of 824 total aligned reads displayed.
GGATGATCTGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTT > NC_000913/2002184‑2002480 | atCTGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGaa < 2:2712302/149‑1 (MQ=255) tCTGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAAt > 3:561430/1‑149 (MQ=255) tGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAAttt < 1:502153/149‑1 (MQ=255) gcTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTc > 4:1530380/1‑149 (MQ=255) gcTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTc < 4:3136668/149‑1 (MQ=255) cTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGa > 2:4950558/1‑141 (MQ=255) tttCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCt < 1:3196321/148‑1 (MQ=255) tttCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTa > 2:7282400/1‑149 (MQ=255) tttCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTa > 1:5146063/1‑149 (MQ=255) gACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGaa < 4:351642/137‑1 (MQ=255) aCATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGAt > 2:7033137/1‑149 (MQ=255) atatTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGc < 3:1336266/149‑1 (MQ=255) tatTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGAt > 4:1264164/1‑146 (MQ=255) atTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGa < 4:2037476/149‑1 (MQ=255) atTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGa < 1:6717993/149‑1 (MQ=255) atTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGa > 3:2037476/1‑149 (MQ=255) ttGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGGCAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGAt > 3:41304/1‑149 (MQ=255) ttGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACGGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGAt > 4:2912813/1‑149 (MQ=255) ttGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGAt > 2:32506/1‑149 (MQ=255) tGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATa < 1:3472451/149‑1 (MQ=255) gACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTAc < 4:6959505/137‑1 (MQ=255) gACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGc < 1:6470332/149‑1 (MQ=255) acTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGaa > 4:4444174/1‑125 (MQ=255) acTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATc > 4:2565100/1‑149 (MQ=255) acTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATc > 1:1288428/1‑149 (MQ=255) acTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATc < 4:5666762/149‑1 (MQ=255) ttCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTAc > 1:1036598/1‑132 (MQ=255) ttCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGt > 1:242854/1‑149 (MQ=255) ttCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGt > 4:5471026/1‑149 (MQ=255) ggTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCa < 2:2892280/149‑1 (MQ=255) ggTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCa < 3:4350427/149‑1 (MQ=255) tCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAg > 3:6091219/1‑149 (MQ=255) cGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGc < 3:1611951/149‑1 (MQ=255) gCGTCCTGAATACTGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCgg > 4:3584138/1‑149 (MQ=255) cGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGTGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGa < 4:5222346/149‑1 (MQ=255) cTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCg > 3:5172378/1‑149 (MQ=255) gAATACGGGACTGCTCTTCATACAGGGTGTTAGTGGTGTTGTTCAGTTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTg > 2:6719837/1‑149 (MQ=255) aaTACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTgg > 3:4820055/1‑149 (MQ=255) aaTACGGGACTGCGCCTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCCTTCAGCGGATCCGTgg < 1:6027944/149‑1 (MQ=255) tACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGtt > 1:1897992/1‑149 (MQ=255) tACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGtt > 1:4351566/1‑149 (MQ=255) cGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGtttt > 1:7133315/1‑149 (MQ=255) gggACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTa < 2:4553982/149‑1 (MQ=255) gggACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTa < 3:3388359/149‑1 (MQ=255) ggACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTAc < 2:3965279/149‑1 (MQ=255) gACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTAc > 3:6808171/1‑148 (MQ=255) cTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCAt > 1:6275647/1‑149 (MQ=255) tGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCAtt < 2:6471731/149‑1 (MQ=255) tGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCAtt < 2:138221/149‑1 (MQ=255) tGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCAtt > 1:5804651/1‑149 (MQ=255) gcTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTc < 4:1059110/123‑1 (MQ=255) gcTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGc > 4:3830448/1‑149 (MQ=255) cTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGa < 3:6412342/84‑1 (MQ=255) cTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGa > 4:6412342/1‑84 (MQ=255) cTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCa > 1:68266/1‑149 (MQ=255) ttCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCaa < 4:2293208/149‑1 (MQ=255) ttCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCaa > 2:3544035/1‑149 (MQ=255) aGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcag < 4:1835689/149‑1 (MQ=255) aGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcag > 2:5239592/1‑149 (MQ=255) gACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcagc > 3:7020046/1‑149 (MQ=255) gACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGaa < 4:4936747/80‑1 (MQ=255) gACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcagc > 2:1474566/1‑149 (MQ=255) aGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCACACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGtt > 2:5937774/1‑129 (MQ=255) ttGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCag > 2:5548361/1‑149 (MQ=255) tGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCaga < 3:354151/149‑1 (MQ=255) gTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCt < 2:2270925/78‑1 (MQ=255) gTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCaga > 3:2178611/1‑147 (MQ=255) aGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCt > 3:2398818/1‑149 (MQ=255) tggtgTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTca < 1:1526370/149‑1 (MQ=255) ggtgTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGAAAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTcac < 2:4224312/149‑1 (MQ=255) gtgtTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTcacc < 1:778655/149‑1 (MQ=255) gttgttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTcaccac < 3:2912813/149‑1 (MQ=255) gttgttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTcacca < 1:986835/148‑1 (MQ=255) ttgttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCATCGAGGGAAGAACGGAATTTGTCTAc < 2:4766231/71‑1 (MQ=255) ttgttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCaccacc > 2:1694039/1‑149 (MQ=255) gttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACcag < 3:2607730/149‑1 (MQ=255) aGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGt > 3:1829835/1‑149 (MQ=255) tAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCt < 1:2128435/149‑1 (MQ=255) aaCCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcagca < 1:3827939/118‑1 (MQ=255) aCCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTc < 3:1118550/120‑1 (MQ=255) cgcgGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGttt > 2:909834/1‑149 (MQ=255) gcgGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTg > 1:5372894/1‑149 (MQ=255) gcgGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTg > 4:4681008/1‑149 (MQ=255) gAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGc > 2:510797/1‑147 (MQ=255) aGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACATCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTAct < 2:6174864/149‑2 (MQ=255) aGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTAcc > 3:5466759/1‑149 (MQ=255) aGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCg < 1:4748948/76‑1 (MQ=255) ggTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCa < 4:41304/149‑1 (MQ=255) ggTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCa > 1:2907614/1‑149 (MQ=255) accgcaccgAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATc > 4:3292360/1‑149 (MQ=255) accgcaccgAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATc > 2:2483974/1‑149 (MQ=255) gcaccgAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGc > 3:6602786/1‑149 (MQ=255) gcaccgAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGc < 1:2689622/149‑1 (MQ=255) gggAAGAACGGAATTTGTCTACAGAAGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCg > 2:1969094/1‑149 (MQ=255) ggAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGt > 4:6647803/1‑149 (MQ=255) gaagaaCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTa < 3:3830448/149‑1 (MQ=255) gaagaaCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTa < 1:4159639/149‑1 (MQ=255) gaagaaCGGAATTTGTCTACAGATGCGATAACATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTa > 4:730786/1‑149 (MQ=255) aagaaCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTAt > 4:6141412/1‑149 (MQ=255) aCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGttt > 3:3153218/1‑149 (MQ=255) | GGATGATCTGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTT > NC_000913/2002184‑2002480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |