New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 432541145 (1.050)10 (0.080) 9/214 NT 6.5% coding (311/540 nt) yajI putative lipoprotein
?NC_000913 = 432555 151 (1.160)coding (297/540 nt) yajI putative lipoprotein

ATCAACATCGCTGGGGGCGAGGACGCTGGCAGGGGCATTAATCAATTGATTCTGCACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/432393‑432541
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccctTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTGCCAGCGTCCTCGCC  <  NC_000913/432555‑432408
                                                                                                                                                                                                                                                                                                         
ATCAACATCGCTGGGGGCGAGGACGCTGGCAGGGGCATTAATCAATTGATTCTGCACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCT                                                                                                                                                      >  3:360170/1‑149
   AACATCGCTGGGGGCGAGGACGCTGGCAGGGGCATTAATCAATTGATTCTGCACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACC                                                                                                                                                        <  1:259899/144‑1
   AACATCGCTGGGGGCGAGGACGCTGGCAGGGGCATTAATCAATTGATTCTGCACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACC                                                                                                                                                        >  2:259899/1‑144
                              AGGGGCATTAATCAATTGATTCTGCACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGGGTGAGT                                                                                                                               <  4:1030397/142‑1
                              AGGGGCATTAATCAATTGATTCTGCACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGGGTGAGT                                                                                                                               >  3:1030397/1‑142
                                                       ACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACC                                                                                                                                                        <  2:1103295/92‑1
                                                       ACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACC                                                                                                                                                        >  1:1103295/1‑92
                                                         ATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGGGTGA                                                                                                                                 >  4:410378/1‑113
                                                         ATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGGGTGA                                                                                                                                 <  3:410378/113‑1
                                                                  CTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGGGTGA                                                                                                                                 >  4:966776/1‑104
                                                                  CTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGGGTGA                                                                                                                                 <  3:966776/104‑1
                                                                    GAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGGGT                                                                                                                                   >  1:815426/1‑100
                                                                    GAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGGGT                                                                                                                                   <  2:815426/100‑1
                                                                                      CCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCT                                                                                                                                                      >  4:1226468/1‑63
                                                                                      CCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCT                                                                                                                                                      <  3:1226468/63‑1
                                                                                                    TATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGG                                                                                                                                     <  2:842736/66‑1
                                                                                                    TATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCTTACACTACGTATTCAGG                                                                                                                                     >  1:842736/1‑66
                                                                                                                                               CACCCTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTG                             >  2:1114090/1‑127
                                                                                                                                               CACCCTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTG                             <  1:1114090/127‑1
                                                                                                                                                ACCCTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTGCCAGCGTCCT      <  1:269790/149‑1
                                                                                                                                                ACCCTTACACTACGTAGTCCGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCATATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTGCCAGCGTCCT      >  2:1439665/1‑149
                                                                                                                                                  CCTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTGCCAGCGTCCTCG    >  2:1238093/1‑149
                                                                                                                                                  CCTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTGCCAGCGTCCTCG    >  4:626137/1‑149
                                                                                                                                                   CTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTG                <  3:653258/136‑1
                                                                                                                                                   CTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTG                >  4:653258/1‑136
                                                                                                                                                   CTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGT                                                                                             <  2:116009/59‑1
                                                                                                                                                   CTTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGT                                                                                             >  1:116009/1‑59
                                                                                                                                                    TTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTGCCAGCGTCCTCGCC  >  3:317340/1‑149
                                                                                                                                                    TTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAAT                               >  2:1465752/1‑120
                                                                                                                                                    TTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAAT                               <  1:1465752/120‑1
                                                                                                                                                    TTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTT                                                                                            <  3:1063237/59‑1
                                                                                                                                                    TTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTT                                                                                            >  4:1063237/1‑59
                                                                                                                                                                                                                                                                                                         
ATCAACATCGCTGGGGGCGAGGACGCTGGCAGGGGCATTAATCAATTGATTCTGCACATTGATTTCCTGAAAGTTGTCTATTGTTCCCTGAATTTGCCCATATTCAACAGTTCCGCTGAATGCGGGCAAGGGATCATTCGACTCACCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/432393‑432541
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccctTACACTACGTATTCAGGGTGAGTCGAATGATCCCTTGCCCGCATTCAGCGGAACTGTTGAATATGGGCAAATTCAGGGAACAATAGACAACTTTCAGGAAATCAATGTGCAGAATCAATTGATTAATGCCCCTGCCAGCGTCCTCGCC  <  NC_000913/432555‑432408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.