New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1813391 =	85 (0.620)	14 (0.110)	11/212	NT	14.9%	intergenic (‑259/+30)	ydjO/cedA	uncharacterized protein/cell division modulator
	?	NC_000913	1813410 =	80 (0.620)					intergenic (‑278/+11)	ydjO/cedA	uncharacterized protein/cell division modulator

TGGCAAATATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1813544‑1813391 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggagGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGA  >  NC_000913/1813410‑1813557                                                                                                                                                                                                                                                                                                                TGGCAAATATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCC                                                                                                                                                           <  2:976379/149‑1   GCAAATATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGG                                                                                                                                                         >  3:55337/1‑149   GCAAATATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGG                                                                                                                                                         <  2:417551/149‑1     AAATATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGGGA                                                                                                                                                       <  3:921002/149‑1     AAATATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGGGA                                                                                                                                                       <  1:372467/149‑1     AAATATGTTGCGTTTGTACTGAGGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTCTTGCCGGGA                                                                                                                                                       <  1:1255591/149‑1     AAAGATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGGGA                                                                                                                                                       <  1:842420/149‑1              GCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGAGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGG                                                                                                                                                         <  4:696577/138‑1              GCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGAGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGG                                                                                                                                                         >  3:696577/1‑138                          ATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGG                                                                                                                                                         >  2:1246021/1‑126                          ATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGG                                                                                                                                                         <  1:1246021/126‑1                                   TCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGG                                                                                                                                                         <  4:309697/117‑1                                   TCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGG                                                                                                                                                         >  3:309697/1‑117                                                                                                                                    ATACCTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTG                                                                                           >  1:656937/1‑82                                                                                                                                    ATACCTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTG                                                                                           <  2:656937/82‑1                                                                                                                                       CCTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGG                                                                                                                  <  2:1302934/56‑1                                                                                                                                       CCTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGG                                                                                                                  >  1:1302934/1‑56                                                                                                                                        CTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTA                                   <  2:1093028/134‑1                                                                                                                                        CTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTA                                   >  1:1093028/1‑134                                                                                                                                        CTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAA                                                                      >  4:433376/1‑99                                                                                                                                        CTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAA                                                                      <  3:433376/99‑1                                                                                                                                        CTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGC                                                                              >  2:3781/1‑91                                                                                                                                        CTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGC                                                                              <  1:3781/91‑1                                                                                                                                        CTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGAT                                                                                                             <  2:1134366/60‑1                                                                                                                                        CTCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGAT                                                                                                             >  1:1134366/1‑60                                                                                                                                         TCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAA                          >  3:133220/1‑142                                                                                                                                         TCCCGGTTTTGCCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAA                          <  4:133220/142‑1                                                                                                                                                      GGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATC      >  4:140443/1‑149                                                                                                                                                      GGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATC      >  2:2416/1‑149                                                                                                                                                       GGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCC     >  4:266461/1‑149                                                                                                                                                        GAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATCTTTGCCACGCAGCATCCA    <  2:842420/149‑1                                                                                                                                                          GGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGA  <  2:1392364/149‑1                                                                                                                                                                                                                                                                                                                TGGCAAATATGTTGCGTTTGTACTGATGGGAGAGTCATTTCTGCGCTCACCGGCGTTTACTGTGCCTGAATCTGCCCAACGTTGGGCAAATCAGATCCGCCAGGAAGGGGAAGTGACTGAGTAAGGATTACATACCTCCCGGTTTTGCCGGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1813544‑1813391 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggagGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGA  >  NC_000913/1813410‑1813557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.