| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1896460 = | 104 (0.750) | 8 (0.060) | 8/216 | NT | 7.9% | coding (291/579 nt) | nudL | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| ? | NC_000913 | 1896486 = | 86 (0.650) | coding (317/579 nt) | nudL | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase | |||||
CGACCCAGATGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCCGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1896612‑1896460‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgataGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGTCGTTATCACCCTTTAGATATCT > NC_000913/1896486‑1896632 CGACCCAGATGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCC < 1:270957/149‑1 CCCAGATGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGGAGCCAGTGACGCTATCGACGGGCGGCAGCACGCCGAT > 4:832777/1‑149 CCAGATTTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGGCGTGCTGCCGCCCGTCGATA > 2:1039792/1‑149 CCAGATGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCCGATA < 3:832777/149‑1 CCAGATGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCCGATA > 2:281830/1‑149 CCAGATGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCCGATA > 1:898662/1‑149 AGATGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGGCGTGCTGCCGCCCGTCGATAGC < 1:1039792/149‑1 TGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCCGA > 1:1289300/1‑142 TGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCCGA < 2:1289300/142‑1 GTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCC > 4:1010402/1‑139 GTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCC < 3:1010402/139‑1 TTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCC < 3:1281542/93‑1 TTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCC > 4:1281542/1‑93 GCTATCGACGGGCGGCAGCACGCCGATAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCT > 3:10876/1‑149 TATCGACGGGCGGCAGCACGCCGATAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCC < 3:1105096/91‑1 TATCGACGGGCGGCAGCACGCCGATAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCC > 4:1105096/1‑91 ATCGACGGGCGGCAGCACGCCGATAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGG > 1:553200/1‑149 ATCGACGGGCGGCAGCACGCCGATAGCGTCACTGGCTACCAGG > 2:757940/1‑43 ATCGACGGGCGGCAGCACGCCGATAGCGTCACTGGCTACCAGG < 1:757940/43‑1 TCGACGGGCGGCAGCACGCCGATAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGT < 4:10876/149‑1 GACGGGCGGCAGCACGCCGATAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGTCG > 3:78081/1‑149 ACGCCGATAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGTCGTTATCACCCTTTA < 2:553200/149‑1 TAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGTCGTTATCACCCTTTAGATATCT < 4:1158670/149‑1 TAGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGTCGTTATCACCCTTTAGATATCT < 4:212081/149‑1 AGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGTCGT < 1:1429931/129‑1 AGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGTCGT > 2:1429931/1‑129 CGACCCAGATGTAATGCCTGGGCGAGCGGCATTTCAAACACCGCCGAGACTTCATCTTCACTGGCGCGATACGGCAGATCGGGCGGGATAATGCCGACCACTGGGGTTACCTGGTAGCCAGTGACGCTATCGACGGGCGGCAGCACGCCGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1896612‑1896460‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgataGCGTCACTGGCTACCAGGTAACCCCAGTGGTCGGCATTATCCCGCCCGATCTGCCGTATCGCGCCAGTGAAGATGAAGTCTCGGCGGTGTTTGAAATGCCGCTCGCCCAGGCATTACATCTGGGTCGTTATCACCCTTTAGATATCT > NC_000913/1896486‑1896632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |