| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2172892 = | 67 (0.490) | 8 (0.060) | 6/212 | NT | 12.0% | intergenic (‑19/+29) | gatD/gatC | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| ? | NC_000913 | 2172911 = | 54 (0.420) | intergenic (‑38/+10) | gatD/gatC | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC | |||||
TTTTCTCCCCGCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2173045‑2172892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccccctCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAA > NC_000913/2172911‑2173058 TTTTCTCCCCGCAAAATCTTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTCTTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATC > 4:102248/1‑149TTTTCTCCCCGCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTACACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATC > 4:920126/1‑149 TTTCTCCCCGTAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCC < 3:102248/149‑1 CTCCCCGCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCC < 4:396890/149‑1 TCCCCGCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCT < 1:396361/149‑1 TCCCCGCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATC > 4:1386184/1‑144 TCCCCGCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAAAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATC < 3:1386184/144‑1 GCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCC < 4:319665/140‑1 GCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCC > 3:319665/1‑140 TCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCTC > 1:445010/1‑136 TCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCTC < 2:445010/136‑1 ATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCT < 1:774989/125‑1 ATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCT > 2:774989/1‑125 GTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCT < 2:439600/70‑1 GTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCT > 1:439600/1‑70 CTGAGGGGGAGGTTATCCCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAA < 3:1083511/68‑1 CTGAGGGGGAGGTTATCCCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAA > 2:1387677/1‑64 CTGAGGGGGAGGTTATCCCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAA < 1:1387677/64‑1 CTGAGGGGGAGGTTAGCCCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAA > 4:1083511/1‑68 GAGGGGGAGGTTATCCCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGG > 1:106092/1‑149 GAGGGGGAGGTTATCCCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGG < 2:106092/149‑1 GAGGGGGAGGTTATCCCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGG < 2:977838/147‑1 GAGGGGGAGGTTATCCCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGG > 1:977838/1‑147 CCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCA < 2:1104120/149‑1 CCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCA < 4:405111/149‑1 CCCCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCA < 4:511424/149‑1 CCTCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGT < 3:396890/149‑1 TCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAA > 4:539158/1‑149 TTTTCTCCCCGCAAAATATTCCCGGTTTCATTATTATCGGTGCAATTTATCTGACCGGTATTTTCATGACCTGGCGTAGAGCGCGTGGCTTTATTAAACAAGAGAAAGTCGTTCTCGCAGAATAATTTTTACCTGAGGGGGAGGTTATCCCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2173045‑2172892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccccctCAGGTAAAAATTATTCTGCGAGAACGACTTTCTCTTGTTTAATAAAGCCACGCGCTCTACGCCAGGTCATGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAA > NC_000913/2172911‑2173058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |