| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3504888 = | 114 (0.830) | 6 (0.050) | 5/216 | NT | 6.4% | intergenic (+105/+47) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| ? | NC_000913 | = 4070469 | 68 (0.520) | intergenic (‑68/+46) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase | |||||
AGGCGAATCCACAATCAGAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3505038‑3504888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctcTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATATGCATTGCAGTGGACAGACCGTTTCACTTGCCGCGGGGG < NC_000913/4070469‑4070323 AGGCGAATCCACAATCAGAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCC > 1:769226/1‑149AGGCGAATCCACAATCAGAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCC > 3:1223247/1‑149AGGCGAATCCACAATCAGAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCC > 3:564547/1‑149 GCGAATCCACAATCAGAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTC < 4:564547/149‑1 GCGAATCCACAATCAGAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTC < 2:769226/149‑1 GAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCC > 4:38291/1‑131 GAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCC < 3:38291/131‑1 GAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTCTCCCCAAAGGGGCGAG > 4:1353091/1‑111 GAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTCTCCCCAAAGGGGCGAG < 3:1353091/111‑1 GATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCC < 4:787620/76‑1 GATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCC > 3:787620/1‑76 CAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCT < 3:1150001/56‑1 CAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCT > 4:1150001/1‑56 GATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTCTCCCCAAAGGGGCGAGG < 1:510795/59‑1 GATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTCTCCCCAAAGGGGCGAGG > 2:510795/1‑59 ACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTCTCCCCAAAGGGGCGAGG < 1:472955/53‑1 ACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTCTCCCCAAAGGGGCGAGG > 2:472955/1‑53 GGTCCCCTCGCCCCTTTGGGGAGAGGGTACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATATGCATTGCAGTGGACAGACCGTTTCACTTGCC > 2:806406/1‑149 CTCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATATGCATTGCAGTGGACAGACCGT > 3:1380411/1‑133 CTCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATATGCATTGCAGTGGACAGACCGT < 4:1380411/133‑1 CTCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATA < 3:53335/111‑1 CTCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTAGGCAAATCACCAATA > 4:53335/1‑111 TCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATATGCATTGCAGTGGACAGACCGTTTCACTTGCCGCGGGGG > 4:19035/1‑149 TCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATATGCATTGCAGTGGA > 3:827904/1‑124 TCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATATGCATTGCAGTGGA < 4:827904/124‑1 TCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTA < 2:186136/95‑1 TCTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTA > 1:186136/1‑95 AGGCGAATCCACAATCAGAACATTGTGCGATTCGCATTAACCCGAATCGCAGCGGTGAAGAGACGGTGCTGCGGATTTTGCGTGAGAGTATTGCCAGTATTTAATGCTGGATAGCACCGTCAAGCTAAATTCCGTACTGAACGGTCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3505038‑3504888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctcTCCCCAAAGGGGCGAGGGGACCGTCCGGTGCAGTTTTTGGGTTTGACATCAGCCTCACGGGAGGCTGTATGTCGTTAATTAAGGTGCCTTGTATGCAAATCACCAATATGCATTGCAGTGGACAGACCGTTTCACTTGCCGCGGGGG < NC_000913/4070469‑4070323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |