New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3510611	109 (0.790)	6 (0.050)	6/216	NT	5.3%	coding (366/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein
	?	NC_000913	= 3510630	112 (0.850)					coding (347/1164 nt)	yhfX	putative pyridoxal 5'‑phosphate binding protein

GGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3510459‑3510611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATCCGGGCCAGGAG  <  NC_000913/3510630‑3510485                                                                                                                                                                                                                                                                                                             GGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGAT                                                                                                                                                        <  4:104655/149‑1  GCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAGACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATG                                                                                                                                                       >  1:1239221/1‑149  GCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATG                                                                                                                                                       >  2:1142248/1‑149    AACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGGGTAAACACGGTGATGAC                                                                                                                                                     >  4:785542/1‑149                              CTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCGGCGCTTTGTCGAGAGTAAACACGGTGATG                                                                                                                                                       <  2:426566/121‑1                              CTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATa                                                                                                                                                       >  1:426566/1‑120                              CTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGCCGTTGAACAGGGCACCGACGTC                                                                                                                             <  1:844661/147‑1                              CTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGCCGTTGAACAGGGCACCGACGTC                                                                                                                             >  2:844661/1‑147                                                                                         GCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGCCGTTGAACAGGGCACCGACGTCATCACCG                                                                                                                      >  1:146117/1‑95                                                                                         GCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGCCGTTGAACAGGGCACCGACGTCATCACCG                                                                                                                      <  2:146117/95‑1                                                                                                      CGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGCCGTTGAACAGGGCACCG                                                                                                                                  >  1:888336/1‑70                                                                                                      CGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACGCCGTTGAACAGGGCACCG                                                                                                                                  <  2:888336/70‑1                                                                                                                                                     TGACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATCCGGGTCAGG    >  4:681041/1‑149                                                                                                                                                     TGACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATCCGGGCCAGG    >  3:289085/1‑149                                                                                                                                                     TGACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTA                                    <  2:1453513/117‑1                                                                                                                                                     TGACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTA                                    >  1:1453513/1‑117                                                                                                                                                      GACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATCCGGGTCAGGA   <  3:681041/149‑1                                                                                                                                                      GACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATCCGGGCCAGGA   <  2:878671/149‑1                                                                                                                                                      GACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATC             <  1:1216580/139‑1                                                                                                                                                      GACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATC             >  2:1216580/1‑139                                                                                                                                                      GACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATA                                  <  4:1014800/118‑1                                                                                                                                                      GACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATA                                  >  3:1014800/1‑118                                                                                                                                                      GACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAG                                        <  3:1253750/112‑1                                                                                                                                                      GACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAG                                        >  4:1253750/1‑112                                                                                                                                                       ACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGG                                                                  >  3:259134/1‑85                                                                                                                                                       ACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGG                                                                  <  4:259134/85‑1                                                                                                                                                       ACGCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTCTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATCCGGGCCAGGAG  >  2:1239221/1‑149                                                                                                                                                         GCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCT                  >  3:706238/1‑131                                                                                                                                                         GCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCT                  <  4:706238/131‑1                                                                                                                                                                                                                                                                                                             GGCAACACCTTGAGGGCAAAACCGCTCTCCTGGCCCGGATAAAGAAAATCATCGTCGCTATAAACTTTAAGCAGCACAGACTGGATTCGCCCGGCCTTCACCGCCGCCGCAGAAACTTCCCGCGCTTTGTCGAGAGTAAACACGGTGATGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3510459‑3510611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgCCGTTGAACAGGGCACCGACGTCATCACCGTGTTTACTCTCGACAAAGCGCGGGAAGTTTCTGCGGCGGCGGTGAAGGCCGGGCGAATCCAGTCTGTGCTGCTTAAAGTTTATAGCGACGATGATTTTCTTTATCCGGGCCAGGAG  <  NC_000913/3510630‑3510485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.