New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3908685	138 (1.000)	11 (0.080)	9/216	NT	7.7%	coding (755/891 nt)	pstA	phosphate ABC transporter permease
	?	NC_000913	= 3908700	132 (1.000)					coding (740/891 nt)	pstA	phosphate ABC transporter permease

ACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3908534‑3908685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgCCAACCTGCCGG‑TGACGATCTTTAAGTTTGCGATGAGCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACA  <  NC_000913/3908700‑3908556                                                                                                                                                                                                                                                                                                            ACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGA                                                                                                                                                       >  4:1365360/1‑149   CGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     <  4:941852/149‑1   CGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     <  3:1365360/149‑1                TCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     <  4:1302153/136‑1                TCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     >  3:1302153/1‑136                    CCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCACTTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     >  3:617936/1‑132                    CCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     <  4:617936/132‑1                         TTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATCT                                                                                                                              <  1:590903/149‑1                             TTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGA                                                                                                                                                       <  4:1271990/121‑1                             TTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGA                                                                                                                                                       >  3:1271990/1‑121                                TTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCG                                                                                                                                                    <  4:176711/121‑1                                TTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCG                                                                                                                                                    >  3:176711/1‑121                                     AAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     <  2:421673/115‑1                                     AAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTACGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     >  1:421673/1‑115                                      AAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATGGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATCTTTAA                                                                                                                          >  2:1392887/1‑140                                      AAAACAACGCGCGCCAGAATCTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATCTTTAA                                                                                                                          <  1:1392887/140‑1                                                    CAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGA                                                                                                                                                       <  2:120498/98‑1                                                    CAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGA                                                                                                                                                       >  1:120498/1‑98                                                          GTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATC                                                                                                                               <  2:1446581/115‑1                                                          GTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATC                                                                                                                               >  1:1446581/1‑115                                                                     GTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGATCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATCTTTAAG                                                                                                                         <  3:997170/110‑1                                                                                    TGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATCTTTAA                                                                                                                          >  3:582098/1‑94                                                                                    TGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATCTTTAA                                                                                                                          <  4:582098/94‑1                                                                                       TCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATC                                                                                                                               <  2:343539/86‑1                                                                                       TCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCGCCAACCTGCCGG‑TGACGATC                                                                                                                               >  1:343539/1‑86                                                                                                                  GCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     <  2:372028/38‑1                                                                                                                  GCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATC                                                                                                                                                     >  1:372028/1‑38                                                                                                                                              CTTAAAGATCGTC‑ACCGGCAGGTTGGCGATCTTTAAGTTTGCGATGAGCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTAC                                                <  4:997170/110‑1                                                                                                                                                     ATCGCCAACCTGCCGG‑TGACGATCTTTAAGTTTGCGATGAGCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACA  >  1:523731/1‑149                                                                                                                                                        GCCAACCTGCCGG‑TGACGATCTTTAAGTTTGCGATGAGCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAG          <  2:72668/138‑1                                                                                                                                                        GCCAACCTGCCGG‑TGACGATCTTTAAGTTTGCGATGAGCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAG          >  1:72668/1‑138                                                                                                                                                                                                                                                                                                            ACCGTGTCAGCAATATCAACCGTGTTTATTCTTCGCAAAAACAACGCGCGCCAGAATGTTCAGCAGCAGTACGCACAGGGTAATGATCAATACCCCGGCCCAGGCCAATTGCTGCCATTCCGCAAACGGGCTCATCGCAAACTTAAAGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3908534‑3908685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgCCAACCTGCCGG‑TGACGATCTTTAAGTTTGCGATGAGCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACA  <  NC_000913/3908700‑3908556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.