New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4534139	198 (1.430)	15 (0.120)	13/206	NT	7.9%	intergenic (‑86/+291)	yjhX/yjhZ	UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
	?	NC_000913	= 4534160	171 (1.360)					intergenic (‑107/+270)	yjhX/yjhZ	UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment

GCGGACGTGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4533982‑4534139 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataatcagtTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGTTCTTCAGTATGAATTTATCCCGTCAGGAACAACATACCTTACACGTT  <  NC_000913/4534160‑4534015                                                                                                                                                                                                                                                                                                                  GCGGACGTGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTG                                                                                                                                                             >  4:1336542/1‑149        TGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                                                                      <  2:105038/149‑1        TGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                                                                      <  1:563863/149‑1             AATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                                                                      >  2:1422205/1‑144             AATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                                                                      <  1:1422205/144‑1             AATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                                                                      >  1:1457711/1‑144             AATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                                                                      <  2:1457711/144‑1                   TCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                                                                        >  1:450276/1‑136                   TCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                                                                        <  2:450276/136‑1                        CTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTC                                                                                                                                      <  3:257811/149‑1                        CTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTC                                                                                                                                      >  2:293869/1‑149                               GAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                                                                        <  2:1326565/124‑1                               GAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                                                                        >  1:1326565/1‑124                                 GAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                                                                      <  2:694292/124‑1                                 GAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                                                                      >  1:694292/1‑124                                       GTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTA                                                                                                                       <  1:293869/149‑1                                            GTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCA                                                                                                                    <  2:764593/147‑1                                            GTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCA                                                                                                                    >  1:764593/1‑147                                                 TTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTAT                                                                                                                      >  3:1117223/1‑140                                                 TTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTAT                                                                                                                      <  4:1117223/140‑1                                                   GTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                                                                        >  2:384386/1‑104                                                   GTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                                                                        <  1:384386/104‑1                                                       CTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAG‑‑‑CCCGACCTTTTCAGGCCGGACTGATT                                                                                                                        <  2:542982/129‑1                                                       CTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAG‑‑‑CCCGACCTTTTCAGGCCGGACTGATT                                                                                                                        >  1:542982/1‑129                                                                     TCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTA                                                                                                                       >  1:370140/1‑119                                                                     TCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTA                                                                                                                       <  2:370140/119‑1                                                                        TACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                                                                        >  3:288884/1‑83                                                                        TACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                                                                        <  4:288884/83‑1                                                                             AAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                                                                         <  4:915070/77‑1                                                                             AAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                                                                         >  3:915070/1‑77                                                                               GAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                                                                           >  2:307378/1‑73                                                                               GAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                                                                           <  1:307378/73‑1                                                                                    TATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTAT                                                                                                                      <  2:473668/105‑1                                                                                    TATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTAT                                                                                                                      >  1:473668/1‑105                                                                                      TTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                                                                           <  1:1368814/66‑1                                                                                      TTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                                                                           >  2:1368814/1‑66                                                                                                  GTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                                                                           <  4:1436184/54‑1                                                                                                  GTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                                                                           >  3:1436184/1‑54                                                                                                       AAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGA                                                                                                                          >  3:346868/1‑82                                                                                                       AAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGA                                                                                                                          <  4:346868/82‑1                                                                                                                                                     GATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGA                                                           <  3:64474/99‑1                                                                                                                                                     GATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGA                                                           >  4:64474/1‑99                                                                                                                                                     GATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAA                                                                                                         >  2:920600/1‑53                                                                                                                                                     GATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAA                                                                                                         <  1:920600/53‑1                                                                                                                                                        AATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGTTCTTCAGTATGAATTTATCCCGTCAGGAACAACATACCTTACA      <  1:1318169/149‑1                                                                                                                                                          TCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGTTCTTCAGTATGAATTTATCCCGTCAGGAACAACATACCT          >  3:804545/1‑143                                                                                                                                                          TCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGTTCTTCAGTATGAATTTATCCCGTCAGGAACAACATACCT          <  4:804545/143‑1                                                                                                                                                           CAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGTTCTTC                                            >  3:1148935/1‑108                                                                                                                                                           CAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGTTCTTC                                            <  4:1148935/108‑1                                                                                                                                                            AGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGTTCTTCAGTATGAATTTATCCCGTCAGGAACAACATACCTTACACGTT  >  3:1311116/1‑149                                                                                                                                                             GTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAG                                                   <  1:310438/99‑1                                                                                                                                                             GTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAG                                                   >  2:310438/1‑99                                                                                                                                                                                                                                                                                                                  GCGGACGTGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4533982‑4534139 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataatcagtTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGTTCTTCAGTATGAATTTATCCCGTCAGGAACAACATACCTTACACGTT  <  NC_000913/4534160‑4534015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.