New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12930226 (0.040)113 (0.820) 80/226 NT 95.0% intergenic (‑100/‑505) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 4518472 = NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 223 total aligned reads displayed.

GAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGT  >  NC_000913/1292883‑1293168
                                                                                                                                           |                                                                                                                                                  
ctgaatctgagacaacatctggcaaggctgggacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTAtt                                                                                                                                           >  1:60371‑M1/133‑149 (MQ=255)
    atctgagacaacatctggcaaggctgggacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTAtttt                                                                                                                                         >  3:193911‑M1/129‑147 (MQ=255)
     tctgagacaacatctggcaaggctgggacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTtgtg                                                                                                                                      <  3:1375417‑M1/22‑1 (MQ=255)
        gagacaacatctggcaaggctgggacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTtgt                                                                                                                                       <  4:427297‑M1/21‑1 (MQ=255)
          gttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttac                                                                                                                                 <  1:988520‑M1/149‑20 (MQ=255)
          gacaacatctggcaaggctgggacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTgccgcc                                                                                                                                 <  3:1346030‑M1/27‑1 (MQ=255)
            caacatctggcaaggctgggacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCaa                                                                                                                               <  1:1352785‑M1/29‑1 (MQ=255)
             gttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactga                                                                                                                              >  1:446320‑M1/1‑127 (MQ=255)
             aacatctggcaaggctgggacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCt                                                                                                                                                >  3:630818‑M1/120‑131 (MQ=255)
                 aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgattta                                                                                                                          >  2:1127585‑M1/1‑123 (MQ=255)
                 aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgattta                                                                                                                          >  1:700707‑M1/1‑123 (MQ=255)
                      caaggctgggacggaagttaccgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCtt                                                                                                                     >  1:558520‑M1/111‑149 (MQ=255)
                          aGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgat                                                                                                                 >  3:382472‑M1/1‑114 (MQ=255)
                           gTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatg                                                                                                                <  1:1127585‑M1/149‑37 (MQ=255)
                           gTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatg                                                                                                                <  3:539230‑M1/149‑37 (MQ=255)
                              ggacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATaaa                                                                                                             >  2:1352785‑M1/103‑149 (MQ=255)
                              cTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagt                                                                                                                        <  1:1246652‑M1/138‑29 (MQ=255)
                               gacggaagttactgtcgttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATaaaa                                                                                                            >  1:251681‑M1/102‑149 (MQ=255)
                                   cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgatttt                                                                                                        <  2:1411348‑M1/149‑45 (MQ=255)
                                      aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaag                                                                                                     <  4:382472‑M1/149‑48 (MQ=255)
                                      aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatg                                                                                                                <  4:819601‑M1/138‑37 (MQ=255)
                                            gtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgta                                                                                                                     <  1:1092484‑M1/127‑32 (MQ=255)
                                            gtaATCTCAAACTTATATTGGGGTGGTATGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgta                                                                                                                     >  2:1092484‑M1/1‑96 (MQ=255)
                                             taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttg                                                                                              >  4:176358‑M1/1‑95 (MQ=255)
                                                ttctcaaaatcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                       <  4:1092550‑M1/53‑1 (MQ=255)
                                                  tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgat                                                                                                                             >  4:750537‑M1/1‑90 (MQ=255)
                                                        ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggt                                                                                                              <  3:433540‑M1/122‑39 (MQ=255)
                                                        atcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGtt                                                                                                                                                  >  4:1143622‑M1/77‑86 (MQ=255)
                                                        atcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTtgt                                                                                                                                       >  2:969475‑M1/77‑97 (MQ=255)
                                                        atcggtggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAtata                                                                                   >  4:1375417‑M1/77‑149 (MQ=255)
                                                            atTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttc                                                                               <  2:700707‑M1/149‑70 (MQ=255)
                                                              ggagttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTa                                                                             <  4:1341074‑M1/79‑1 (MQ=255)
                                                                agttgcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                         <  3:908498‑M1/51‑1 (MQ=255)
                                                                 ggtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatca                                                                          <  3:176358‑M1/149‑75 (MQ=255)
                                                                    gcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTc                                                                                                                                                 <  1:582007‑M1/11‑1 (MQ=255)
                                                                    gcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTc                                                                                                                                                 >  2:455907‑M1/65‑75 (MQ=255)
                                                                    gcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTc                                                                                                                                                 >  2:582007‑M1/65‑75 (MQ=255)
                                                                    gcatgacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTaca                                                                       <  1:1299965‑M1/85‑1 (MQ=255)
                                                                     gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaag                                                                                                     >  1:572066‑M1/1‑71 (MQ=255)
                                                                        gacaaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCga                                                                   <  4:472097‑M1/89‑1 (MQ=255)
                                                                           aaggtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGc                                                                                 <  3:1108516‑M1/75‑1 (MQ=255)
                                                                              gtcatcgggcattatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAttt                                                             <  4:101914‑M1/95‑1 (MQ=255)
                                                                                      taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAAGTGAAAATTGggtaatgctgccaacttactgatttagtgtataatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgcta                                                     >  4:1221064‑M1/1‑54 (MQ=255)
                                                                                        gagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtg                                                                                                             >  1:734422‑M1/1‑52 (MQ=255)
                                                                                        gagCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtg                                                                                                             <  2:734422‑M1/91‑40 (MQ=255)
                                                                                        attatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCt                                                                                                                                                <  3:1057404‑M1/12‑1 (MQ=255)
                                                                                         agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaa                                                                                                      >  2:37120‑M1/1‑51 (MQ=255)
                                                                                         agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaa                                                                                                      <  1:37120‑M1/97‑47 (MQ=255)
                                                                                          tatctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                 <  4:30520‑M1/107‑1 (MQ=255)
                                                                                          gCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTg                                                                                                                                                    <  2:52755/50‑1 (MQ=255)
                                                                                          gCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTg                                                                                                                                                    >  1:52755/1‑50 (MQ=255)
                                                                                           ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatca                                                                          <  3:1284782‑M1/123‑75 (MQ=255)
                                                                                           ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaag                                                                                                     <  3:898323‑M1/96‑48 (MQ=255)
                                                                                           ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaag                                                                                                     >  4:898323‑M1/1‑49 (MQ=255)
                                                                                           atctgaacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAg                                                >  2:1299965‑M1/42‑149 (MQ=255)
                                                                                             ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaagg                                              >  3:730330‑M1/1‑47 (MQ=255)
                                                                                             ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaagg                                              >  1:964584‑M1/1‑47 (MQ=255)
                                                                                             ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgatt                                                                                                          >  3:70242‑M1/1‑47 (MQ=255)
                                                                                                aacataaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                           <  2:895881‑M1/113‑1 (MQ=255)
                                                                                                  ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtgg                                         >  1:429258‑M1/1‑42 (MQ=255)
                                                                                                  ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtgg                                         >  2:1010912‑M1/1‑42 (MQ=255)
                                                                                                    taaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGc                                                                                 >  3:650253‑M1/33‑107 (MQ=255)
                                                                                                    taaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGc                                                                                 <  4:650253‑M1/75‑1 (MQ=255)
                                                                                                     aaaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACtt                                      <  2:678828‑M1/118‑1 (MQ=255)
                                                                                                      aaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                     >  3:472097‑M1/31‑149 (MQ=255)
                                                                                                      aaacactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                     >  3:30520‑M1/31‑149 (MQ=255)
                                                                                                         cactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                      <  3:141981‑M1/86‑1 (MQ=255)
                                                                                                         cactatcagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                 <  1:845687‑M1/107‑1 (MQ=255)
                                                                                                          tgCAATAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtggtgcgtaac                                 <  3:1221064‑M1/149‑116 (MQ=255)
                                                                                                             aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                      <  2:1134616/109‑1 (MQ=255)
                                                                                                             aaTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                      >  1:1134616/1‑109 (MQ=255)
                                                                                                              aTAGCCAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatg                                                                                                                >  4:630111‑M1/1‑30 (MQ=255)
                                                                                                               cagtaagttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCAt                            >  3:101914‑M1/22‑149 (MQ=255)
                                                                                                                  ccAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttcc                                                                              >  1:1224695‑M1/1‑26 (MQ=255)
                                                                                                                   cAGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtggtgcgtaa                                  >  4:656759‑M1/1‑25 (MQ=255)
                                                                                                                    aGGAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgc                                                       <  4:1424464‑M1/117‑94 (MQ=255)
                                                                                                                     ggAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcaga                                                                        <  4:942534‑M1/99‑77 (MQ=255)
                                                                                                                     ggAATGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcaga                                                                        >  3:942534‑M1/1‑23 (MQ=255)
                                                                                                                      ttggagtcattaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCa                                                                                                     <  4:713752‑M1/55‑1 (MQ=255)
                                                                                                                       aaTGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtggtgcgtaacggcaaaagcactg                    <  2:1235950‑M1/149‑129 (MQ=255)
                                                                                                                         tGTAAGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtggtgcgtaacggcaaaagcactgcc                  >  3:796978‑M1/1‑19 (MQ=255)
                                                                                                                            aaGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgc                                                       >  3:316502‑M1/1‑16 (MQ=255)
                                                                                                                            aaGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgc                                                       <  4:316502‑M1/109‑94 (MQ=255)
                                                                                                                             aGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcg                                            <  2:1177602‑M1/119‑105 (MQ=255)
                                                                                                                             aGGAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcg                                            >  1:1177602‑M1/1‑15 (MQ=255)
                                                                                                                              attaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACGCCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTatgtg             <  4:1256723‑M1/143‑3 (MQ=255)
                                                                                                                              attaccCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg             <  1:1450570‑M1/143‑1 (MQ=255)
                                                                                                                               gAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgcttctgaaggcgtggtgcgtaacggcaaaagcactgccggacat            >  4:357662‑M1/1‑13 (MQ=255)
                                                                                                                               gAATTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttc                                                                >  4:1394303‑M1/1‑13 (MQ=255)
                                                                                                                                 aTTCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgcttctgaaggcgtggtgcgtaacggcaaaagcactgccggacatca          <  3:357662‑M1/149‑139 (MQ=255)
                                                                                                                                  ttCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttc                                                                               <  4:292915‑M1/79‑70 (MQ=255)
                                                                                                                                   tCAAAATTGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtggtgcgtaacggcaaaagcactgccggacatcagc        <  2:429258‑M1/149‑141 (MQ=255)
                                                                                                                                   cCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTaca                                                                       <  3:804719‑M1/85‑1 (MQ=255)
                                                                                                                                   cCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTa                 <  2:1188173‑M1/139‑1 (MQ=255)
                                                                                                                                     aaaaTTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTa      <  4:918570/149‑1 (MQ=255)
                                                                                                                                       aaTTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATc    <  2:562071/149‑1 (MQ=255)
                                                                                                                                         ttGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtggtgcgtaacggcaagagcactgccggacatcagcgctatc  <  1:1010912‑M1/149‑147 (MQ=255)
                                                                                                                                         ttGggtaatgctgccaacttactgatttagtgtatgatggtgattttaaggtgcttgcgtggcttccatttccatcagatgtccttcctgctccgctactgaaggcgtggtgcgtaacggcaaaagcactgccggacatcagcgctatc  >  2:211900‑M1/1‑3 (MQ=255)
                                                                                                                                         ttGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                <  4:262847/135‑1 (MQ=255)
                                                                                                                                         ttGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                >  3:262847/1‑135 (MQ=255)
                                                                                                                                           |                                                                                                                                                  
GAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGT  >  NC_000913/1292883‑1293168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.