New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1816343NA (NA)6 (0.040) 4/220 NT NA noncoding (159/189 nt) RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 = 1816373 NA (NA)noncoding (189/189 nt) RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

Only 100 of 114 total aligned reads displayed.

ACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTGGGAAACAGTAA  >  NC_000913/1816201‑1816491
                                                                                                                                              |                                                                                                                                                    
aCGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGa                                                                                                                                                >  3:224515/1‑149 (MQ=255)
     gcaTCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCaa                                                                                                                                           <  3:1390865/147‑1 (MQ=255)
         ccGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGtt                                                                                                                                       <  1:1261341/149‑1 (MQ=255)
            gCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCAc                                                                                                                                    >  3:260236/1‑149 (MQ=255)
            gCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCAc                                                                                                                                    <  4:224515/149‑1 (MQ=255)
                               ttCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTCTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATc                                                                                                                 >  4:509659/1‑149 (MQ=255)
                                 cAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCt                                                                                                               <  3:509659/149‑1 (MQ=255)
                                    tatataGCAGGAAACACGTAGGCCTGGTAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGATACGCCGCCTTTGTAGGAATTAATCgcc                                                                                                                                                   >  4:929135‑M1/1‑107 (MQ=255)
                                    tatatTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCAc                                                                                                            >  4:1432095/1‑149 (MQ=255)
                                        ttGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTATCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCgattaattcctacaaa                                                                                                        >  3:777537‑M2/1‑133 (MQ=255)
                                              gAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATcc                                                                                                  >  2:976865/1‑149 (MQ=255)
                                              gAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATcc                                                                                                  <  3:1432095/149‑1 (MQ=255)
                                                   acGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCg                                                                                                                                                  >  4:1045469/1‑96 (MQ=255)
                                                     gTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCaaa                                                                                                                     >  4:361558/1‑123 (MQ=255)
                                                     gTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCaaa                                                                                                                     <  3:361558/123‑1 (MQ=255)
                                                     gTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAAc                                                                                           >  3:167984/1‑149 (MQ=255)
                                                       aGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTc                                                                                         >  3:694602/1‑149 (MQ=255)
                                                                   cgaagcgCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCa                                                                                                                       >  3:1028369/1‑107 (MQ=255)
                                                                   cgaagcgCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCa                                                                                                                       <  4:1028369/107‑1 (MQ=255)
                                                                    gaagcgCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATaa                                                                             >  4:162458/1‑148 (MQ=255)
                                                                           aTCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCAt                                                                                                                             <  1:662066/93‑1 (MQ=255)
                                                                           aTCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCAt                                                                                                                             >  2:662066/1‑93 (MQ=255)
                                                                           aTCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCAc                                                                                                            >  2:29570/1‑110 (MQ=255)
                                                                            tCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGa                                                                    >  3:798103/1‑149 (MQ=255)
                                                                            tCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCACAACCGATAACCACGCTGa                                                                    <  4:694602/149‑1 (MQ=255)
                                                                              aGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGc                                                                  >  3:148728/1‑149 (MQ=255)
                                                                               ggCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAg                                                                   <  3:867236/147‑1 (MQ=255)
                                                                               ggCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAg                                                                   >  4:867236/1‑147 (MQ=255)
                                                                                gCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGAt                                                                               >  2:1104533/1‑134 (MQ=255)
                                                                                gCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGAt                                                                               <  1:1104533/134‑1 (MQ=255)
                                                                                 cAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGAt                                                               <  1:976865/149‑1 (MQ=255)
                                                                                  aGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTa                                                                                                         >  3:730714/1‑106 (MQ=255)
                                                                                  aGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTa                                                                                                         <  4:730714/106‑1 (MQ=255)
                                                                                  aGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATa                                                              <  4:167984/149‑1 (MQ=255)
                                                                                       tGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCAcc                                                         <  1:1412615/149‑1 (MQ=255)
                                                                                          gTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCttt                                                      >  4:1393291/1‑149 (MQ=255)
                                                                                           tttGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCgccagatgcggtgtgaaccttgcatccggcga                                                                                                                      >  4:999366‑M1/1‑52 (MQ=255)
                                                                                           tttGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCgccagatgcggcgtgaaccttgcatccggcga                                                                                                                      <  3:999366‑M1/84‑33 (MQ=255)
                                                                                           tttGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCgccagatgcggcgtgaaccttgcatccggcga                                                                                                                      >  4:631032‑M1/1‑52 (MQ=255)
                                                                                           tttGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCgccagatgcggcgtgaaccttgcatccggcga                                                                                                                      <  3:631032‑M1/84‑33 (MQ=255)
                                                                                            ttGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGa                                                                                <  2:156755/121‑1 (MQ=255)
                                                                                            ttGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGa                                                                                <  4:264007/121‑1 (MQ=255)
                                                                                            ttGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGa                                                                                >  3:264007/1‑121 (MQ=255)
                                                                                            ttGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGa                                                                                >  1:156755/1‑121 (MQ=255)
                                                                                             tGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTcccc                                                                                      <  3:314979/114‑1 (MQ=255)
                                                                                             tGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTcccc                                                                                      >  4:314979/1‑114 (MQ=255)
                                                                                              gTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAac                                                  >  1:555807/1‑149 (MQ=255)
                                                                                               tCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGc                                                                  <  3:625574/132‑1 (MQ=255)
                                                                                               tCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGAt                                                               >  3:768085/1‑135 (MQ=255)
                                                                                               tCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGAt                                                               <  4:768085/135‑1 (MQ=255)
                                                                                                    agTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCt                                            <  4:148728/149‑1 (MQ=255)
                                                                                                    agTATCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGCTAACCACGCTGAGCGATAGCACCTTTCAACGACGCt                                            <  4:798103/149‑1 (MQ=255)
                                                                                                        tcAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGG                                                                                                                         >  4:1042355‑M2/1‑68 (MQ=255)
                                                                                                        tcAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGG                                                                                                                         <  3:1042355‑M2/68‑1 (MQ=255)
                                                                                                          aaGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCAcc                                                         <  3:1185431/130‑1 (MQ=255)
                                                                                                          aaGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCAcc                                                         >  4:1185431/1‑130 (MQ=255)
                                                                                                          aaGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTc                                                     <  3:463344/134‑1 (MQ=255)
                                                                                                          aaGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTc                                                     >  4:463344/1‑134 (MQ=255)
                                                                                                          aaGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTc                                      >  4:892518/1‑149 (MQ=255)
                                                                                                                 gcAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCa                                                                                                                       <  4:978944/61‑1 (MQ=255)
                                                                                                                 gcAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCa                                                                                                                       >  3:978944/1‑61 (MQ=255)
                                                                                                                 gcAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCaa                                                                                    <  2:976890/96‑1 (MQ=255)
                                                                                                                 gcAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCaa                                                                                    >  1:976890/1‑96 (MQ=255)
                                                                                                                   aGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATaa                                                                             >  4:689023/1‑101 (MQ=255)
                                                                                                                   aGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATaa                                                                             <  3:689023/101‑1 (MQ=255)
                                                                                                                    gTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCa                            <  1:203671/149‑1 (MQ=255)
                                                                                                                     ttACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAAc                                                                                   <  1:1062651/93‑1 (MQ=255)
                                                                                                                     ttACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAAc                                                                                   >  2:1062651/1‑93 (MQ=255)
                                                                                                                       aCGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAac                                                  >  2:438999/1‑124 (MQ=255)
                                                                                                                       aCGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAac                                                  <  1:438999/124‑1 (MQ=255)
                                                                                                                       aCGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATc                              >  3:442518/1‑144 (MQ=255)
                                                                                                                       aCGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATc                              <  4:442518/144‑1 (MQ=255)
                                                                                                                         gccgccTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAacga                                                <  2:1236369/124‑1 (MQ=255)
                                                                                                                         gccgccTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAacga                                                >  1:1236369/1‑124 (MQ=255)
                                                                                                                           cgccTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGt                     >  4:930299/1‑149 (MQ=255)
                                                                                                                              cTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAAcc                                                                                  <  2:338109/85‑1 (MQ=255)
                                                                                                                              cTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAAcc                                                                                  >  1:338109/1‑85 (MQ=255)
                                                                                                                               tttGTAGGAATTAATCgccggatgcaaggttcacgccgcatctggcgattaattcctacaaaggcggcgtaactgcgccgcttgatactgctgacaaacgcaaaactgcctgatgcgcttcgcttatcaggcctacgtgtttcctgcaa                 >  3:777537‑M1/1‑16 (MQ=255)
                                                                                                                               tttGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAg                 >  2:1374299/1‑149 (MQ=255)
                                                                                                                               tttGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAg                 >  4:236115/1‑149 (MQ=255)
                                                                                                                               tttGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAg                 >  1:1214063/1‑149 (MQ=255)
                                                                                                                                   tAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTg             <  1:69002/149‑1 (MQ=255)
                                                                                                                                   tAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTg             >  1:910851/1‑149 (MQ=255)
                                                                                                                                   tAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTg             >  2:39781/1‑149 (MQ=255)
                                                                                                                                   tAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTg             >  3:121105/1‑149 (MQ=255)
                                                                                                                                   tAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACACCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACAt                               >  2:83709/1‑131 (MQ=255)
                                                                                                                                    aGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTgg            >  2:225703/1‑149 (MQ=255)
                                                                                                                                    aGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTgg            >  1:787053/1‑149 (MQ=255)
                                                                                                                                    aGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTgg            <  3:892518/149‑1 (MQ=255)
                                                                                                                                     ggAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTggg           >  3:1381808/1‑149 (MQ=255)
                                                                                                                                     ggAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTggg           <  1:39781/149‑1 (MQ=255)
                                                                                                                                         ttAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTGGGAAAc       >  3:746838/1‑149 (MQ=255)
                                                                                                                                          tAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTGGGAAACa      <  4:736287/149‑1 (MQ=255)
                                                                                                                                             tCGCCGGATGCAAGGTTCACGCCGCATCTGGCgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaa                                                                    >  4:631032‑M2/1‑32 (MQ=255)
                                                                                                                                             tCGCCGGATGCAAGGTTCACGCCGCATCTGGCgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaa                                                                    <  3:631032‑M2/84‑53 (MQ=255)
                                                                                                                                             tCGCCGGATGCAAGGTTCACGCCGCATCTGGCgattaattcctacaaaggcggcgtaactgcgccgcttgagactgctgacaaa                                                                    <  3:999366‑M2/84‑53 (MQ=255)
                                                                                                                                             tCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTGGGAAACAGTa   <  2:910851/149‑1 (MQ=255)
                                                                                                                                              cGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTGGGAAACAGTaa  <  2:787053/149‑1 (MQ=255)
                                                                                                                                              cGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTGGGAAACAGTaa  <  4:455485/149‑1 (MQ=255)
                                                                                                                                              cGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTGGGAAACAGTaa  <  3:1393291/149‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                    
ACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCAAGGTTCACGCCGCATCTGGCAAACATCCTCACTTACACATCCCGATAACTCCCCAACCGATAACCACGCTGAGCGATAGCACCTTTCAACGACGCTGATGTCAACACATCCAGCTCCGTTAAGCGTGGGAAACAGTAA  >  NC_000913/1816201‑1816491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.