New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2700550 =	31 (0.220)	9 (0.080)	7/188	NT	36.2%	noncoding (31/77 nt)	ohsC	sRNA antisense regulator of shoB toxin
	?	NC_000913	2700601 =	6 (0.050)					intergenic (+5/+17)	ohsC/acpS	sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1

GGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTG  >  NC_000913/2700408‑2700653                                                                                                                                               |                                                                                                        aaccacggctacggctatggggcgaggcattaaaactggcggaaaagctgggcgttgcaaatatgcatgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTaaaaa                                                                                                   >  3:994224‑M1/143‑149 (MQ=255)       gTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTaaaa                                                                                             >  2:343541/1‑149 (MQ=255)             ggctatggggcgaggcattaaaactggcggaaaagctgggcgttgcaaatatgcatgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCg                                                                                       <  4:1006150‑M1/19‑1 (MQ=255)                   aTCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTaaa                                                                                                     >  1:1276054/1‑129 (MQ=255)                   aTCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTaaa                                                                                                     <  2:1276054/129‑1 (MQ=255)                     cAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAc                                                                               <  4:1290115/149‑1 (MQ=255)                              ttaaaactggcggaaaagctgggcgttgcaaatatgcatgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                      <  4:1281909‑M1/36‑1 (MQ=255)                               taaaactggcggaaaagctgggcgttgcaaatatgcatgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCgggg                                                                     >  3:1281909‑M1/113‑149 (MQ=255)                                   actggcggaaaagctgggcgttgcaaatatgcatgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGttt                                                                 >  3:1006150‑M1/109‑149 (MQ=255)                                    cGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGtttt                                                                <  1:343541/149‑1 (MQ=255)                                       gcggaaaagctgggcgttgcaaatatgcatgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAAccc                                                                                          <  1:382033‑M1/16‑1 (MQ=255)                                       gcggaaaagctgggcgttgcaaatatgcatgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAAccc                                                                                          >  2:382033‑M1/105‑120 (MQ=255)                                             tCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAATATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAAGTAAAGTTAAAAAGTAAAAccccc                                                                                        <  2:155027/116‑1 (MQ=255)                                             tCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGATAAAAAGTAAAAccccc                                                                                        >  1:155027/1‑116 (MQ=255)                                               gAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                      <  1:863926/132‑1 (MQ=255)                                               gAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                      >  2:863926/1‑132 (MQ=255)                                                 gTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                      <  2:185857/130‑1 (MQ=255)                                                 gTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                      >  1:185857/1‑130 (MQ=255)                                                          cTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTaaaaa                                                                                                   >  4:647529/1‑92 (MQ=255)                                                          cTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTaaaaa                                                                                                   <  3:647529/92‑1 (MQ=255)                                                          cTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTcc                                                                                   <  1:835725/108‑1 (MQ=255)                                                          cTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTcc                                                                                   >  2:835725/1‑108 (MQ=255)                                                           tAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTa                                                                                                <  3:666325/94‑1 (MQ=255)                                                           tAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTa                                                                                                >  4:666325/1‑94 (MQ=255)                                                                   atgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGt                                                                   >  3:1154041‑M1/77‑115 (MQ=255)                                                                   atgtaacgctggcagatgagcggcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGt                                                                   <  4:1154041‑M1/39‑1 (MQ=255)                                                                           cTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAc                                                                               <  1:1016925/95‑1 (MQ=255)                                                                           cTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAc                                                                               >  2:1016925/1‑95 (MQ=255)                                                                            ttGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACtttt                                                          <  2:1350203/115‑1 (MQ=255)                                                                            ttGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTAGGGGGTTTTACtttt                                                          >  1:1350203/1‑115 (MQ=255)                                                                                aaaaGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAc                                                                               >  1:813249/1‑90 (MQ=255)                                                                                aaaaGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAc                                                                               <  2:813249/90‑1 (MQ=255)                                                                                aaaaGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACtttt                                                          >  3:646666/1‑111 (MQ=255)                                                                                aaaaGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACtttt                                                          <  4:646666/111‑1 (MQ=255)                                                                                         gcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGt                                                                   <  3:469201‑M1/39‑1 (MQ=255)                                                                                         gcactatgcttgtgccacggtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGt                                                                   >  4:469201‑M1/55‑93 (MQ=255)                                                                                                    cATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAc                                                                               >  4:1151954/1‑70 (MQ=255)                                                                                                    cATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAc                                                                               <  3:1151954/70‑1 (MQ=255)                                                                                                            gtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCgggg                                                                     <  3:763347‑M1/37‑1 (MQ=255)                                                                                                            gtaattattgaaagttaaaaataataccgttctctTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCgggg                                                                     >  4:763347‑M1/36‑72 (MQ=255)                                                                                                             tgttgtTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAaga                                                    <  4:409976/88‑1 (MQ=255)                                                                                                             tgttgtTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAaga                                                    >  3:409976/1‑88 (MQ=255)                                                                                                                       ggTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTa                                                        >  4:1144643/1‑74 (MQ=255)                                                                                                                       ggTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTa                                                        <  3:1144643/74‑1 (MQ=255)                                                                                                                                         ttAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTg  <  4:1351286/110‑1 (MQ=255)                                                                                                                                         ttAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTg  >  3:1351286/1‑110 (MQ=255)                                                                                                                                               |                                                                                                        GGTCACGTTAATCTTTCCATCAATATTGCTTTCTTCGTAAAGGCTCGAGTTTTTATGCTAAAGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTG  >  NC_000913/2700408‑2700653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.