New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729452	10 (0.070)	6 (0.050)	5/206	NT	22.6%	intergenic (‑8/+164)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	4168342 =	32 (0.250)					intergenic (+142/‑30)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu

CTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAA  >  NC_000913/2729312‑2729598                                                                                                                                             |                                                                                                                                                   cTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGCCCTCTAGACGAAGGGGACACGAAAATTGCTTATc                                                                                                                                            >  3:1205862/1‑149 (MQ=255)            gTTTTGAGATATTGAGGTCGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGt                                                                                                                                 >  2:237844/1‑149 (MQ=17)              tttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGa                                                                                                                               <  4:1205862/149‑1 (MQ=32)                   gaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATatcacgcaacgcgtgataagcaattt                                                                                                                          >  4:497244‑M1/1‑123 (MQ=255)                     tatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTc                                                                                                                        >  2:980908/1‑149 (MQ=32)                       ttGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATatcacgcaacgcgtgataagcaattttcgt                                                                                                                      <  3:497244‑M1/149‑31 (MQ=255)                         gAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtgt                                                                                                                    <  1:980908/149‑1 (MQ=11)                                               aaaCCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATatcacgcaacgcgtgataagcaattttc                                                                                                                        <  1:173516‑M1/123‑29 (MQ=255)                                               aaaCCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATatcacgcaacgcgtgataagcaattttc                                                                                                                        >  2:173516‑M1/1‑95 (MQ=255)                                                                   cTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATatcacgcaacgcgtgataagcaattttcgt                                                                                                                      <  4:1207532‑M1/105‑31 (MQ=255)                                                                   cTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATatcacgcaacgcgtgataagcaattttcgt                                                                                                                      >  3:1207532‑M1/1‑75 (MQ=255)                                                                                                             tCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt                                <  3:64745/149‑1 (MQ=32)                                                                                                             tCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt                                <  2:233985/149‑1 (MQ=32)                                                                                                                             gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca                         >  1:45693/1‑140 (MQ=37)                                                                                                                             gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca                         <  2:45693/140‑1 (MQ=38)                                                                                                                              aaGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt               >  3:1031943/1‑149 (MQ=38)                                                                                                                                      acGAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctag                                                   >  3:397161‑M1/1‑8 (MQ=255)                                                                                                                                      acGAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctag                                                   <  4:397161‑M1/105‑98 (MQ=255)                                                                                                                                      acGAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcc                                                        <  2:1282024‑M1/100‑93 (MQ=255)                                                                                                                                      acGAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcc                                                        >  1:1282024‑M1/1‑8 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt                               >  3:1022272‑M1/1‑6 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt                               <  4:1022272‑M1/123‑118 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt                               <  4:1138130‑M1/123‑118 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt                               >  3:1138130‑M1/1‑6 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg                                  <  3:1085020‑M1/120‑115 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctgg                                  >  4:1085020‑M1/1‑6 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatccc                                                       <  1:1244448‑M1/99‑94 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatccc                                                       <  2:864217‑M1/99‑94 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatccc                                                       >  2:1244448‑M1/1‑6 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatccc                                                       >  1:864217‑M1/1‑6 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggt                                                                >  3:1051857‑M1/1‑6 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggt                                                                >  1:123504‑M1/1‑6 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggt                                                                <  4:1051857‑M1/90‑85 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggt                                                                <  2:123504‑M1/90‑85 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggc                                                                            >  2:1097652‑M1/1‑6 (MQ=255)                                                                                                                                        gAAAATatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggc                                                                            <  1:1097652‑M1/78‑73 (MQ=255)                                                                                                                                          aaaTatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcgccgaccttaatatc   <  1:612148‑M1/149‑146 (MQ=255)                                                                                                                                           aaTatcacgcaacgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccttttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcgccgaccttaatatct  <  3:964750‑M1/149‑147 (MQ=255)                                                                                                                                            ttatcacgcgttgcgtgataagcaattttcgtgtccccttcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggttt                               >  1:57418‑M1/2‑2 (MQ=255)                                                                                                                                             tatcacgcaacgcgtgataagcaattttcgtgtcccattcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttgtga                           >  4:1385008‑M1/1‑1 (MQ=255)                                                                                                                                             tatcacgcaacgcgtgataagcaattttcgtctccccgtcgtctagaggcccaggacaccgccctttcacggcggtaacaggggttcgaatcccctaggggacgccacttgctggtttgtga                           <  3:1385008‑M1/122‑122 (MQ=255)                                                                                                                                             |                                                                                                                                                   CTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAA  >  NC_000913/2729312‑2729598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.