New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2849188 =70 (0.510)7 (0.050) 7/212 NT 9.2% coding (54/1827 nt) hycC hydrogenase 3, membrane subunit
?NC_000913 2849218 = 73 (0.560)coding (24/1827 nt) hycC hydrogenase 3, membrane subunit

TTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTCAGCTCACGCTTACGTTTGCT  >  NC_000913/2849040‑2849324
                                                                                                                                                    |                                                                                                                                        
aagccctgcatctggtggataacaccgatatcgcccgcgtcagcaaacgtaagcgtgagctgacctttaacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaata                                                                                                                                          <  3:1061450‑M1/1‑1 (MQ=255)
aagccctgcatctggtggataacaccgatatcgcccgcgtcagcaaacgtaagcgtgagctgacctttaacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaata                                                                                                                                          >  4:578973‑M1/149‑149 (MQ=255)
   ccctgcatctggtggataacaccgatatcgcccgcgtcagcaaacgtaagcgtgagctgacctttaacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaatAgcg                                                                                                                                       <  4:530147‑M1/4‑1 (MQ=255)
     ctgcatctggtggataacaccgatatcgcccgcgtcagcaaacgtaagcgtgagctgacctttaacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaatAgcggc                                                                                                                                     <  4:1045404‑M1/6‑1 (MQ=255)
        gACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAgcggcggc                                                                                                                                  <  3:79318/149‑1 (MQ=255)
         aCAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAgcggcggcg                                                                                                                                 >  2:225100/1‑149 (MQ=255)
          cAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGa                                                                                                                                <  4:802016/149‑1 (MQ=255)
                aCCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAcc                                                                                                                          >  2:685297/1‑149 (MQ=255)
                  cGCTCACGCCAACCGAGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTTAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccac                                                                                                                        <  1:685381/149‑1 (MQ=255)
                     tCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccac                                                                                                                        >  2:1390051/1‑146 (MQ=255)
                     tCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccac                                                                                                                        <  1:1390051/146‑1 (MQ=255)
                       aCGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccacgc                                                                                                                      >  1:1378381/1‑146 (MQ=255)
                       aCGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAAccacgc                                                                                                                      <  2:1378381/146‑1 (MQ=255)
                         gCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACcacgccacgc                                                                                                                 >  4:1079643/1‑149 (MQ=255)
                            aaCCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCAcgccgc                                                                                                              >  3:1081089/1‑149 (MQ=255)
                             aCCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCt                                                                                                             <  4:1081089/149‑1 (MQ=255)
                              tcgcccgcgtcagcaaacgtaagcgtgagctgacctttaacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaatAGCGGCGGCGACAAACCACGCCACGCCGCTa                                                                                                            >  3:1176486‑M1/119‑149 (MQ=255)
                                     agtcagtACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCa                                                                                                     <  3:1079643/149‑1 (MQ=255)
                                     agtcagtACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCa                                                                                                     <  3:474239/149‑1 (MQ=255)
                                         agtACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGa                                                                                                 <  1:685297/149‑1 (MQ=255)
                                                      ccGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAtt                                                                                    <  1:980051/149‑1 (MQ=255)
                                                      ccGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAtt                                                                                    >  1:374953/1‑149 (MQ=255)
                                                        gcgGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTa                                                                                  >  2:515016/1‑149 (MQ=255)
                                                          ggCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGc                                                                                <  1:515016/149‑1 (MQ=255)
                                                                ctttaacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaatAGCGGCGGCGACAAACCACGCCACGCCGCTATTGa                                                                                                        <  2:1314968‑M1/35‑1 (MQ=255)
                                                                ctttaacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaatAGCGGCGGCGACAAACCACGCCACGCCGCTATTGa                                                                                                        >  1:1314968‑M1/85‑119 (MQ=255)
                                                                    aacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaatAGCGGCGGCGACAAACCacgccacgcc                                                                                                                <  2:411135‑M1/27‑1 (MQ=255)
                                                                    aacacggactttggcgatctcaccttgtttcagcaggctcaaagtggagaggctaaatgagcgcaatttccctgatcaatAGCGGCGGCGACAAACCacgccacgcc                                                                                                                >  1:411135‑M1/81‑107 (MQ=255)
                                                                     aCAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAg                                                                                                    <  3:636330/118‑1 (MQ=255)
                                                                     aCAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAg                                                                                                    >  4:636330/1‑118 (MQ=255)
                                                                       aGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACttt                                                                     >  3:1331586/1‑147 (MQ=255)
                                                                       aGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACttt                                                                     <  4:1331586/147‑1 (MQ=255)
                                                                       aGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGa                                                                   <  1:225100/149‑1 (MQ=255)
                                                                        gACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCTCTATTGATCAGGGAAATTgc                                                                                           <  1:1162131/124‑1 (MQ=255)
                                                                        gACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTgc                                                                                           >  2:1162131/1‑124 (MQ=255)
                                                                         aCTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGc                                                                 <  2:374953/149‑1 (MQ=255)
                                                                           tACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCct                                                               >  3:919858/1‑149 (MQ=255)
                                                                            aCCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCctg                                                              <  4:919858/149‑1 (MQ=255)
                                                                             ccAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCa                                                                                                     <  2:213706/109‑1 (MQ=255)
                                                                             ccAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCa                                                                                                     >  1:213706/1‑109 (MQ=255)
                                                                             ccAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCctgc                                                             >  3:427646/1‑149 (MQ=255)
                                                                                aCCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTATTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGa                                                          >  3:900306/1‑149 (MQ=255)
                                                                                   gcgcCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAAc                                                       >  4:230247/1‑149 (MQ=255)
                                                                                        gccAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAgg                                                                                                   >  3:1032035/1‑100 (MQ=255)
                                                                                        gccAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAgg                                                                                                   <  4:1032035/100‑1 (MQ=255)
                                                                                        gccAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGt                                                  <  4:900306/149‑1 (MQ=255)
                                                                                        gccAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGt                                                  >  4:141641/1‑149 (MQ=255)
                                                                                          cAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGAt                                                                                                       <  1:534660/94‑1 (MQ=255)
                                                                                          cAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGAt                                                                                                       >  2:534660/1‑94 (MQ=255)
                                                                                              tCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAt                                                                                     >  4:650807/1‑108 (MQ=255)
                                                                                              tCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAt                                                                                     <  3:650807/108‑1 (MQ=255)
                                                                                                cAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGTGCTCATTTAGc                                                                                >  4:721124/1‑111 (MQ=255)
                                                                                                cAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGc                                                                                <  3:721124/111‑1 (MQ=255)
                                                                                                  gCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGa                                                                   >  3:352524/1‑122 (MQ=255)
                                                                                                  gCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGa                                                                   <  4:352524/122‑1 (MQ=255)
                                                                                                      tCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAg                                                    >  4:1047751/1‑133 (MQ=255)
                                                                                                      tCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAg                                                    <  3:1047751/133‑1 (MQ=255)
                                                                                                         aGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCg                                 >  3:198045/1‑149 (MQ=255)
                                                                                                          tcaaagtggagaggctaaatgagcgcaatttccctgatcaatAGCGGCGGCGACAAACCACGCCACGCCGCTAtt                                                                                                          >  2:331368‑M1/43‑75 (MQ=255)
                                                                                                          tcaaagtggagaggctaaatgagcgcaatttccctgatcaatAGCGGCGGCGACAAACCACGCCACGCCGCTAtt                                                                                                          <  1:331368‑M1/33‑1 (MQ=255)
                                                                                                               ttAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTaa                           >  3:566231/1‑149 (MQ=255)
                                                                                                                tAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAtt                                                                                    <  4:982332/91‑1 (MQ=255)
                                                                                                                tAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAtt                                                                                    >  3:982332/1‑91 (MQ=255)
                                                                                                                tAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTaaa                          <  4:198045/149‑1 (MQ=255)
                                                                                                                    gCTTTTTGAGAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTc                      >  1:353152/1‑149 (MQ=255)
                                                                                                                    gCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAt                                                                                     <  1:83276/86‑1 (MQ=255)
                                                                                                                    gCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCAt                                                                                     >  2:83276/1‑86 (MQ=255)
                                                                                                                           gaaaagaaaaGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTCAGCTCAc               >  1:1357377/1‑149 (MQ=255)
                                                                                                                              aagaaaagaGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCgtgt                              <  3:791865/131‑1 (MQ=255)
                                                                                                                              aagaaaagaGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCgtgt                              >  4:791865/1‑131 (MQ=255)
                                                                                                                                gaaaagaGAAATGCCAGAACAGCGGCGGCGACAAACcacgccacgc                                                                                                                 >  2:1287312/1‑46 (MQ=255)
                                                                                                                                gaaaagaGAAATGCCAGAACAGCGGCGGCGACAAACcacgccacgc                                                                                                                 <  1:1287312/46‑1 (MQ=255)
                                                                                                                                gaaaagaGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGaaa                                                        >  4:204959/1‑103 (MQ=255)
                                                                                                                                gaaaagaGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGaaa                                                        <  3:204959/103‑1 (MQ=255)
                                                                                                                                   aagaGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGt                                                  >  2:1016194/1‑106 (MQ=255)
                                                                                                                                   aagaGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGt                                                  <  1:1016194/106‑1 (MQ=255)
                                                                                                                                     gagaAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTCAGCTCACGCTTACGttt     <  3:141641/149‑1 (MQ=255)
                                                                                                                                      agaAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTCAGCTCACGCTTACGTTTg    >  3:1045404/1‑149 (MQ=255)
                                                                                                                                       gaAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTCAGCTCACGCTTACGtt      >  3:1373510/1‑146 (MQ=255)
                                                                                                                                       gaAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTCAGCTCACGCTTACGtt      <  4:1373510/146‑1 (MQ=255)
                                                                                                                                        aaaTGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTCAGCTCACGCTTACGTTTGCt  <  3:230247/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                        
TTACCAGCGACAGCGCACCGCTCACGCCAACCGCGCCAGTCAGTACAGTGAAGCCCGCGGCTGCCGTATACAGACTACCAACCGCGCCGCCAATTCCAGCTATCCAGCCACTTAACGCTTTTTGAAAAGAAAAGAGAAATGCCAGAACAGCGGCGGCGACAAACCACGCCACGCCGCTATTGATCAGGGAAATTGCGCTCATTTAGCCTCTCCACTTTGAGCCTGCTGAAACAAGGTGAGATCGCCAAAGTCCGTGTTAAAGGTCAGCTCACGCTTACGTTTGCT  >  NC_000913/2849040‑2849324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.