New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3252144NA (NA)10 (0.080) 8/214 NT NA noncoding (80/98 nt) RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3252155 NA (NA)noncoding (91/98 nt) RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 109 total aligned reads displayed.

TTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAA  >  NC_000913/3252007‑3252292
                                                                                                                                         |                                                                                                                                                    
ttAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgctt                                                                                                                                           >  3:852555‑M1/1‑138 (MQ=255)
ttAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAgcgc                                                                                                                                           >  2:1016694/1‑149 (MQ=255)
 tAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCa                                                                                                                                          >  1:1016694‑M2/1‑148 (MQ=255)
     aaaaGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctg                                                                                                                                      <  4:852555‑M1/149‑17 (MQ=255)
            aCCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTa                                                                                                                                               <  1:339396/133‑1 (MQ=255)
            aCCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTa                                                                                                                                               <  1:576813/133‑1 (MQ=255)
            aCCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTa                                                                                                                                               >  2:339396/1‑133 (MQ=255)
            aCCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTa                                                                                                                                               >  2:576813/1‑133 (MQ=255)
             ccTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCatctgg                                                                                                                                     <  2:160145‑M2/142‑7 (MQ=255)
             ccTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCatctgg                                                                                                                                     >  1:160145‑M2/1‑136 (MQ=255)
                 aCGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgc                                                                                                                            <  2:240750/147‑1 (MQ=255)
                 aCGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgc                                                                                                                            >  1:240750/1‑147 (MQ=255)
                          ctctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtca                                                                                                                    <  2:47335/146‑1 (MQ=255)
                          ctctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtca                                                                                                                    >  1:47335/1‑146 (MQ=255)
                                      gCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAgcgcgc                                                                                                     >  2:1366369/1‑149 (MQ=255)
                                       cTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGcc                                                                                                    >  2:909192/1‑149 (MQ=255)
                                           gTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggtc                                                                                                                                   <  2:263580‑M1/114‑20 (MQ=255)
                                           gTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggtc                                                                                                                                   >  1:263580‑M1/1‑95 (MQ=255)
                                           gTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCa                                                                                                >  2:1197920/1‑149 (MQ=255)
                                            tGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCAc                                                                                               >  1:1028167/1‑149 (MQ=255)
                                                tgttgtTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtcatca                                                                                                                 <  4:456541/127‑1 (MQ=255)
                                                tgttgtTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCa                                                                                           >  2:1227066/1‑149 (MQ=255)
                                                  ttgttCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACt                                                                                         >  2:1454396/1‑149 (MQ=255)
                                                    gttCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACttt                                                                                       >  3:606111/1‑149 (MQ=255)
                                                      tCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttat                                                                                     <  1:741508/149‑1 (MQ=255)
                                                        aTGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggt                                                                                                                                    >  4:1258749‑M1/1‑82 (MQ=255)
                                                        aTGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggt                                                                                                                                    <  3:1258749‑M1/100‑19 (MQ=255)
                                                        aTGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCat                                                                                                                                         <  1:1065260‑M2/95‑3 (MQ=255)
                                                        aTGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCat                                                                                                                                         >  2:1065260‑M2/1‑93 (MQ=255)
                                                           tCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgcgc                                                                                                                          <  1:1389565/107‑1 (MQ=255)
                                                           tCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgcgc                                                                                                                          >  2:1389565/1‑107 (MQ=255)
                                                            cGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTc                                                                               <  1:909192/149‑1 (MQ=255)
                                                            cGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTc                                                                               <  1:1197920/149‑1 (MQ=255)
                                                            cGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTc                                                                               <  1:1454396/149‑1 (MQ=255)
                                                                  tgGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGaa                                                                         >  1:1109133/1‑149 (MQ=255)
                                                                    gCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGc                                                                                                                                    <  1:645967/88‑1 (MQ=255)
                                                                    gCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGc                                                                                                                                    >  2:645967/1‑88 (MQ=255)
                                                                     cATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa                                                                          <  2:770078/145‑1 (MQ=255)
                                                                     cATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa                                                                          >  1:770078/1‑145 (MQ=255)
                                                                      aTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggtc                                                                                                                                   >  4:724652‑M1/1‑68 (MQ=255)
                                                                      aTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggtc                                                                                                                                   <  3:724652‑M1/87‑20 (MQ=255)
                                                                      aTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgc                                                                                                                            >  3:793864/1‑94 (MQ=255)
                                                                      aTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgc                                                                                                                            <  4:793864/94‑1 (MQ=255)
                                                                      aTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTaa                                                                                  >  4:486758/1‑136 (MQ=255)
                                                                      aTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTaa                                                                                  <  3:486758/136‑1 (MQ=255)
                                                                              cTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctg                                                                                                                                      <  2:120320‑M1/76‑17 (MQ=255)
                                                                              cTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctg                                                                                                                                      >  1:120320‑M1/1‑60 (MQ=255)
                                                                               ttATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc                                                                                                 >  3:450685/1‑112 (MQ=255)
                                                                               ttATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTc                                                                                                 <  4:450685/112‑1 (MQ=255)
                                                                                 aTCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGTGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGcc                                                          >  4:503605/1‑149 (MQ=255)
                                                                                    tGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTAc                                                              <  1:752938/142‑1 (MQ=255)
                                                                                    tGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTAc                                                              >  2:752938/1‑142 (MQ=255)
                                                                                      aCATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATttc                                                     <  1:1227066/149‑1 (MQ=255)
                                                                                      aCATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATttc                                                     <  2:1109133/149‑1 (MQ=255)
                                                                                         tACAAACCATTGTACATTCAATAGATTGCATAACCCGTGCAGAACAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcatt                                                  <  3:503605/149‑1 (MQ=255)
                                                                                           cAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCa                                                                                           <  3:829173/106‑1 (MQ=255)
                                                                                           cAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCa                                                                                           >  4:829173/1‑106 (MQ=255)
                                                                                           cAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGaa                                                                         <  2:541676/124‑1 (MQ=255)
                                                                                            aaaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAgcgcgc                                                                                                     <  4:1167046/95‑1 (MQ=255)
                                                                                            aaaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAgcgcgc                                                                                                     >  3:1167046/1‑95 (MQ=255)
                                                                                             aaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCAt                                                        <  1:71950/139‑1 (MQ=255)
                                                                                             aaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACg                                              >  4:719520/1‑149 (MQ=255)
                                                                                                     tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTtta                                                                                      >  1:147309/1‑101 (MQ=255)
                                                                                                     tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTtta                                                                                      <  2:147309/101‑1 (MQ=255)
                                                                                                        aTTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTaa                                   >  3:1388660/1‑149 (MQ=255)
                                                                                                         ttCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTAc                                                              <  4:38488/121‑1 (MQ=255)
                                                                                                         ttCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTAc                                                              >  3:38488/1‑121 (MQ=255)
                                                                                                         ttCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAAt                                  >  2:363854/1‑149 (MQ=255)
                                                                                                          tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAAtt                                 >  1:1009776/1‑149 (MQ=255)
                                                                                                            aaTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTtg                               <  2:1009776/149‑1 (MQ=255)
                                                                                                             aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGaa                                                                     <  2:1025197/110‑1 (MQ=255)
                                                                                                             aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGaa                                                                     >  1:1025197/1‑110 (MQ=255)
                                                                                                              tAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTtgct                             <  4:1388660/149‑1 (MQ=255)
                                                                                                                gATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAAttt                                >  1:218881/1‑144 (MQ=255)
                                                                                                                gATTGCATAACCCGCGCAGACCACATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTCGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCCTTTCATTCACGTCTATTCTTAAttt                                <  2:218881/144‑1 (MQ=255)
                                                                                                                 aTTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTgctgct                          >  4:897558/1‑149 (MQ=255)
                                                                                                                     cATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTCCATTCACGTCTATTCTTAATTTGCTGCTTTaa                      >  1:700881/1‑149 (MQ=255)
                                                                                                                         aCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAAc                  >  4:800857/1‑149 (MQ=255)
                                                                                                                           ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTAt                                         >  4:941701/1‑124 (MQ=255)
                                                                                                                           ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTAt                                         <  3:941701/124‑1 (MQ=255)
                                                                                                                                cAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGAt           <  4:606111/149‑1 (MQ=255)
                                                                                                                                 aGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGAtt          <  3:800857/149‑1 (MQ=255)
                                                                                                                                 aGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGAtt          <  3:529600/149‑1 (MQ=255)
                                                                                                                                  gACCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcac                                            <  2:263580‑M2/114‑96 (MQ=255)
                                                                                                                                  gACCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcac                                            >  1:263580‑M2/1‑19 (MQ=255)
                                                                                                                                  gACCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcat                                                                       <  3:724652‑M2/87‑69 (MQ=255)
                                                                                                                                  gACCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcat                                                                       >  4:724652‑M2/1‑19 (MQ=255)
                                                                                                                                   aCCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacat                                                         <  3:1258749‑M2/100‑83 (MQ=255)
                                                                                                                                   aCCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacat                                                         >  4:1258749‑M2/1‑18 (MQ=255)
                                                                                                                                    ccAGATgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaagg              >  1:160145‑M1/1‑6 (MQ=255)
                                                                                                                                     cAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgcctttt      <  4:852555‑M2/149‑134 (MQ=255)
                                                                                                                                     cAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataag                                                                               <  2:120320‑M2/76‑61 (MQ=255)
                                                                                                                                     cAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataag                                                                               >  1:120320‑M2/1‑16 (MQ=255)
                                                                                                                                       gATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAAtt                                 >  3:1172683/1‑120 (MQ=255)
                                                                                                                                       gATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAAtt                                 <  4:1172683/120‑1 (MQ=255)
                                                                                                                                       gATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCaa    >  3:226250/1‑149 (MQ=255)
                                                                                                                                       gATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCaa    >  4:280610/1‑149 (MQ=255)
                                                                                                                                        aTgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacat                                                         >  2:1065260‑M1/1‑2 (MQ=255)
                                                                                                                                        aTgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacat                                                         <  1:1065260‑M1/95‑94 (MQ=255)
                                                                                                                                         tgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgccttttttta  >  1:1016694‑M1/1‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                                    
TTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAAA  >  NC_000913/3252007‑3252292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.