| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3895222 = | 31 (0.220) | 10 (0.080) | 5/202 | NT | 29.6% | intergenic (+4/+50) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913 | 3895257 = | 20 (0.160) | intergenic (+39/+15) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
GAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCA > NC_000913/3895077‑3895369 | gaACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATaaaaa > 3:735390/1‑149 (MQ=255) aCAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAAc > 4:1107412/1‑149 (MQ=255) aGCCGGAAGTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCCAACCGGAGAAGTGATTGATCAGGGTACGCTGCACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCg < 2:383891/149‑1 (MQ=255) gCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGc > 1:58429/1‑149 (MQ=255) aTTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCaa < 2:58429/149‑1 (MQ=255) tttATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAAt < 3:1107412/149‑1 (MQ=255) tctcctactgcgtgatgaaaatcggtaccggacgtctgcgtgatctaagcccgtgcgtaatcatcgttgcgctgctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATcatg < 4:1046871‑M1/21‑1 (MQ=255) ctactgcgtgatgaaaatcggtaccggacgtctgcgtgatctaagcccgtgcgtaatcatcgttgcgctgctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAAc > 4:1284006‑M1/125‑130 (MQ=255) ctactgcgtgatgaaaatcggtaccggacgtctgcgtgatctaagcccgtgcgtaatcatcgttgcgctgctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAAc < 3:1284006‑M1/6‑1 (MQ=255) tgcgtgatgaaaatcggtaccggacgtctgcgtgatctaagcccgtgcgtaatcatcgttgcgctgctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg > 3:1046871‑M1/121‑149 (MQ=255) gTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCgg < 4:735390/149‑1 (MQ=255) gAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATaaaaaa > 3:397315/1‑117 (MQ=255) gAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATaaaaaa < 4:397315/117‑1 (MQ=255) gAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAAt > 2:1243262/1‑129 (MQ=255) gAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAAt < 1:1243262/129‑1 (MQ=255) gAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcatgc < 1:762558/134‑1 (MQ=255) gAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcatgc > 2:762558/1‑134 (MQ=255) gATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCg > 2:1342225/1‑149 (MQ=255) gCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATaaaa < 3:738620/100‑1 (MQ=255) gCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATaaaa > 4:738620/1‑100 (MQ=255) gCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcat > 2:923157/1‑117 (MQ=255) gCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcat < 1:923157/117‑1 (MQ=255) aaCCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcat > 4:198069/1‑114 (MQ=255) aaCCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcat < 3:198069/114‑1 (MQ=255) atctaagcccgtgcgtaatcatcgttgcgctgctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGc < 4:31935‑M1/10‑1 (MQ=255) atctaagcccgtgcgtaatcatcgttgcgctgctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGc > 3:31935‑M1/87‑96 (MQ=255) aagcccgtgcgtaatcatcgttgcgctgctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg > 3:734368‑M1/83‑111 (MQ=255) aagcccgtgcgtaatcatcgttgcgctgctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg < 4:734368‑M1/29‑1 (MQ=255) attgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCg < 2:332069/109‑1 (MQ=255) attgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCg > 1:332069/1‑109 (MQ=255) ggTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCtt > 2:272628/1‑149 (MQ=255) tACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCa < 1:1342225/149‑1 (MQ=255) aCGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg < 1:272628/149‑1 (MQ=255) gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCa < 3:283951/79‑1 (MQ=255) gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCa > 4:283951/1‑79 (MQ=255) cTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCa > 1:331785/1‑69 (MQ=255) cTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCa < 2:331785/69‑1 (MQ=255) gctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGc < 1:798082‑M1/10‑1 (MQ=255) gctgtttatcctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGc > 2:798082‑M1/56‑65 (MQ=255) ctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg < 1:18378‑M1/29‑1 (MQ=255) ctgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg > 2:18378‑M1/46‑74 (MQ=255) tgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg > 3:352362‑M1/45‑73 (MQ=255) tgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg > 4:699868‑M1/45‑73 (MQ=255) tgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg < 3:699868‑M1/29‑1 (MQ=255) tgaagattgtctttatcgacgctcactaaaatcgatagcgcgttAAAAACCCGCCAGCAATCATGCATGGCgg < 4:352362‑M1/29‑1 (MQ=255) ccGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAt > 1:1332072/1‑90 (MQ=255) ccGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAt < 2:1332072/90‑1 (MQ=255) aTTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCg > 3:510527/1‑100 (MQ=255) aTTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCg < 4:510527/100‑1 (MQ=255) gTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCtt > 3:822805/1‑149 (MQ=255) aTCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCa < 3:128631/88‑1 (MQ=255) aTCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCa > 4:128631/1‑88 (MQ=255) ataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTAc > 3:1462622/1‑142 (MQ=255) ataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTAc < 4:1462622/142‑1 (MQ=255) aaaaaaCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtca > 1:1060613/1‑149 (MQ=255) | GAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCA > NC_000913/3895077‑3895369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |