New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	762803 =	NA (NA)	6 (0.050) +CTACG	6/216	NT	18.3%	noncoding (42/167 nt)	REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	3708527 =	28 (0.200)					intergenic (‑822/+89)	dppA/proK	dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro

TCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCA  >  NC_000913/3708396‑3708675                                                                                                                                    |                                                                                                                                                     tCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTg                                                                                                                                     >  1:90591/1‑149 (MQ=255)                             cTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCt                                                                                                         <  2:90591/149‑1 (MQ=255)                                                      ggTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTc                                                                                   >  4:1321713/1‑146 (MQ=255)                                                      ggTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTc                                                                                   <  3:1321713/146‑1 (MQ=255)                                                            tGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGa                                                                                                                             <  4:676845/98‑1 (MQ=255)                                                            tGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGa                                                                                                                             >  3:676845/1‑98 (MQ=255)                                                                         cTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAg                                                                                                                            <  1:197800/86‑1 (MQ=255)                                                                         cTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAg                                                                                                                            >  2:197800/1‑86 (MQ=255)                                                                          tCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTTGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt                                                                                                   <  4:972234/110‑1 (MQ=255)                                                                          tCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTTGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt                                                                                                   >  3:972234/1‑110 (MQ=255)                                                                               aCTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGc                                                                            <  2:1024208/128‑1 (MQ=255)                                                                               aCTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGc                                                                            >  1:1024208/1‑128 (MQ=255)                                                                                 ttCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCt                                                                                                                                          <  4:313519/64‑1 (MQ=255)                                                                                 ttCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCt                                                                                                                                          >  3:313519/1‑64 (MQ=255)                                                                                       gCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           >  4:12785/1‑105 (MQ=255)                                                                                       gCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           <  3:12785/105‑1 (MQ=255)                                                                                               tGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc                                                                                                                   <  1:99129/73‑1 (MQ=255)                                                                                               tGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc                                                                                                                   >  2:99129/1‑73 (MQ=255)                                                                                                 ctgataagacgcgtcagcgtcgcatcaggcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt                                                                                                   >  4:830315‑M2/36‑87 (MQ=255)                                                                                                 ctgataagacgcgtcagcgtcgcatcaggcctacgTCGAGTCGAACATCCCTGCACCCGGAGGTTCTCATCCTCATGAGCTGCAGAt                                                                                                   <  3:830315‑M2/52‑1 (MQ=255)                                                                                                  gggCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGa                                                                                                            <  2:282872/77‑1 (MQ=255)                                                                                                  gggCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGa                                                                                                            >  1:282872/1‑77 (MQ=255)                                                                                                    ataagacgcgtcagcgtcgcatcaggcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           >  4:957856‑M2/33‑92 (MQ=255)                                                                                                    ataagacgcgtcagcgtcgcatcaggcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           <  3:957856‑M2/60‑1 (MQ=255)                                                                                                     taagacgcgtcagcgtcgcatcaggcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTc                                                                                                                <  1:891364‑M2/39‑1 (MQ=255)                                                                                                     taagacgcgtcagcgtcgcatcaggcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTc                                                                                                                >  2:891364‑M2/32‑70 (MQ=255)                                                                                                            tGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc                                                                                                       >  1:18697/1‑72 (MQ=255)                                                                                                            tGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc                                                                                                       <  2:18697/72‑1 (MQ=255)                                                                                                                gcAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           <  3:669044/80‑1 (MQ=255)                                                                                                                gcAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           >  4:669044/1‑80 (MQ=255)                                                                                                                      ttCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGa                                                                              >  2:3131/1‑87 (MQ=255)                                                                                                                      ttCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGa                                                                              <  1:3131/87‑1 (MQ=255)                                                                                                                          ctcGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           <  4:418341/70‑1 (MQ=255)                                                                                                                          ctcGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           >  3:418341/1‑70 (MQ=255)                                                                                                                          caggcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATagag                                               >  4:1194698‑M2/11‑114 (MQ=255)                                                                                                                          caggcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATagag                                               <  3:1194698‑M2/104‑1 (MQ=255)                                                                                                                             gcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           >  3:885907‑M2/8‑67 (MQ=255)                                                                                                                             gcctacgTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa                                                                                           <  4:885907‑M2/60‑1 (MQ=255)                                                                                                                                    tCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCa  >  1:697887/1‑149 (MQ=255)                                                                                                                                    |                                                                                                                                                     TCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCA  >  NC_000913/3708396‑3708675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.