BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1137859	111 (0.800)	10 (0.080)	10/216	NT	8.3%	coding (489/942 nt)	flgJ	flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase
*	?	NC_000913	= 1137875	116 (0.880)	10 (0.080)	10/216	NT	8.3%	coding (505/942 nt)	flgJ	flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase

Only 100 of 136 total aligned reads displayed.

AACTGTGGTGCGTTATCAAAATCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAGTTACTGAAATCACCA  >  NC_000913/1137727‑1138022

aaCTGTGGTGCGTTATCAAAATCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGTCAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGgtg                                                                                                                                                     <  1:1103502/149‑1 (MQ=255)

aaCTGTGGTGCGTTATCAAAATCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGgtg                                                                                                                                                     >  3:96840/1‑149 (MQ=255)

      ggtgCGTTATCAAAATCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGgtg                                                                                                                                                     <  3:785851/143‑1 (MQ=255)

             tATCAAAATCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCAttt                                                                                                                                        <  3:362608/149‑1 (MQ=255)

             tATCAAAATCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCAttt                                                                                                                                        <  2:1241981/149‑1 (MQ=255)

                cAAAATCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGAt                                                                                                                                     <  1:11965/149‑1 (MQ=255)

                 aaaaTCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATc                                                                                                                                    >  1:642159/1‑149 (MQ=255)

                        ggCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTc                                                                                                                             >  3:723775/1‑149 (MQ=255)

                             tttCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAggcg                                                                                                                        >  2:796099/1‑149 (MQ=255)

                                    gCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTgg                                                                                                                 <  1:1074250/149‑1 (MQ=255)

                                    gCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTgg                                                                                                                 >  4:1043579/1‑149 (MQ=255)

                                         tGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCt                                                                                                            >  4:1369891/1‑149 (MQ=255)

                                           cAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAg                                                                                                                           >  4:84141/1‑132 (MQ=255)

                                           cAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAg                                                                                                                           <  3:84141/132‑1 (MQ=255)

                                           cAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTgg                                                                                                          <  4:723775/149‑1 (MQ=255)

                                               aGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTgg                                                                                                      <  2:1199801/149‑1 (MQ=255)

                                               aGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTgg                                                                                                      >  2:1374360/1‑149 (MQ=255)

                                               aGGCCGTGACACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTgg                                                                                                      <  1:1374360/149‑1 (MQ=255)

                                                ggCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAggcgg                                                                                                                       <  1:163627/131‑1 (MQ=255)

                                                ggCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAggcgg                                                                                                                       >  2:163627/1‑131 (MQ=255)

                                                ggCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTggg                                                                                                     <  4:747374/149‑1 (MQ=255)

                                                ggCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTggg                                                                                                     >  3:727539/1‑149 (MQ=255)

                                                ggCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTggg                                                                                                     <  2:3942/149‑1 (MQ=255)

                                                 gCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTgggg                                                                                                    <  4:1337719/149‑1 (MQ=255)

                                                    gTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGa                                                                                                                                      >  2:615361/1‑112 (MQ=255)

                                                         aCGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGc                                                                                            >  2:603084/1‑149 (MQ=255)

                                                            tAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGgtg                                                                                                                                                     <  1:648825/89‑1 (MQ=255)

                                                                 aCGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATc                                                                                                                                    >  3:958508/1‑101 (MQ=255)

                                                                 aCGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATc                                                                                                                                    <  4:958508/101‑1 (MQ=255)

                                                                   gatgatTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGtgc                                                                                                                                                  <  4:725026‑M2/85‑4 (MQ=255)

                                                                     tgatTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATccgccg                                                                                  <  4:1064922/147‑1 (MQ=255)

                                                                      gatTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGa                                                                               >  3:1022705/1‑149 (MQ=255)

                                                                       atTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATccgccgtttt                                                                              >  4:1158328/1‑145 (MQ=255)

                                                                         tCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGaaaa                                                                            >  3:220491/1‑149 (MQ=255)

                                                                         tCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGaaaa                                                                            >  2:1007148/1‑149 (MQ=255)

                                                                          cGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAGCTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAAc                                                                           <  3:397510/149‑1 (MQ=255)

                                                                          cGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCAc                                                                                                                    >  4:423069/1‑108 (MQ=255)

                                                                             tGCCGGGTGACAGTAAAGCATTCCTCGCGCACCTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGc                                                                        <  4:536148/149‑1 (MQ=255)

                                                                               ccGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGcga                                                                      >  1:355657/1‑149 (MQ=255)

                                                                                 gggTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGcgagc                                                                    >  3:524725/1‑149 (MQ=255)

                                                                                      aCAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGcgagccgagc                                                               <  1:1007148/149‑1 (MQ=255)

                                                                                      aCAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGcgagcc                                                                   <  4:1239126/145‑1 (MQ=255)

                                                                                      aCAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGcgagcc                                                                   >  3:1239126/1‑145 (MQ=255)

                                                                                        aGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACgg                                                                                             >  3:1223608/1‑117 (MQ=255)

                                                                                         gTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCa                                                                                                                     >  3:268276/1‑92 (MQ=255)

                                                                                         gTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCa                                                                                                                     <  4:268276/92‑1 (MQ=255)

                                                                                          tAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTgg                                                                                                          <  3:933929/102‑1 (MQ=255)

                                                                                          tAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTgg                                                                                                          <  4:1439808/102‑1 (MQ=255)

                                                                                          tAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTgg                                                                                                          >  3:1439808/1‑102 (MQ=255)

                                                                                          tAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTgg                                                                                                          >  4:933929/1‑102 (MQ=255)

                                                                                          tAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTgg                                                                                                      <  3:731469/106‑1 (MQ=255)

                                                                                            aaGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAAc                                                         <  3:1043579/149‑1 (MQ=255)

                                                                                             aGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAAcc                                                        <  1:603084/149‑1 (MQ=255)

                                                                                             aGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAAcc                                                        >  1:406251/1‑149 (MQ=255)

                                                                                               cATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTg                                                      >  3:528509/1‑149 (MQ=255)

                                                                                                  tCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGttt                                                   <  4:760486/149‑1 (MQ=255)

                                                                                                  tCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGttt                                                   <  4:727539/149‑1 (MQ=255)

                                                                                                  tCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGttt                                                   <  4:762292/149‑1 (MQ=255)

                                                                                                    cTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCaa                                                                                                <  2:1337557/102‑1 (MQ=255)

                                                                                                    cTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCaa                                                                                                >  1:1337557/1‑102 (MQ=255)

                                                                                                    cTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAAc                                                                           <  2:711579/123‑1 (MQ=255)

                                                                                                    cTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAAc                                                                           >  1:711579/1‑123 (MQ=255)

                                                                                                    cTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTgg                                                 >  2:1436773/1‑149 (MQ=255)

                                                                                                     tCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGgt                                                <  2:355657/149‑1 (MQ=255)

                                                                                                           aaCTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCaaa                                          >  3:417461/1‑149 (MQ=255)

                                                                                                           aaCTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCaaa                                          <  3:1369891/149‑1 (MQ=255)

                                                                                                              tctcGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTggg                                                                                                     <  3:685654/87‑1 (MQ=255)

                                                                                                              tctcGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTggg                                                                                                     >  4:685654/1‑87 (MQ=255)

                                                                                                                tcGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCctc                                     <  3:1388538/149‑1 (MQ=255)

                                                                                                                tcGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCctc                                     >  3:862478/1‑149 (MQ=255)

                                                                                                                  gCTGCCCGCCCAACTGGCTAGCCAGCAAAGCGGTGTGCCACAGCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGTGAAAACGGCGAGCCGAGCTATAACCTGTTTGgt                                                <  1:417324/136‑1 (MQ=255)

                                                                                                                  gCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGgt                                                >  2:417324/1‑136 (MQ=255)

                                                                                                                         gcccAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTg                            >  2:372762/1‑149 (MQ=255)

                                                                                                                           ccAACTGGCAAGCCAGCAAAGCGGTGtgccagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagcgaatcatcgtagttacgtggcacggcctttt                                                            >  2:557446‑M2/1‑26 (MQ=255)

                                                                                                                           ccAACTGGCAAGCCAGCAAAGCGGTGtgccagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagcgaatcatcgtagttacgtggcacggcctttt                                                            <  1:557446‑M2/115‑90 (MQ=255)

                                                                                                                           ccAACGGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGgtgt                                              <  4:171574/129‑1 (MQ=255)

                                                                                                                            cAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGaa                         >  4:247147/1‑149 (MQ=255)

                                                                                                                             aaCTGGCAAGCCAGCAAAGCGGTGtgccagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagcgaatcatc                                                                                   >  3:715381‑M2/1‑24 (MQ=255)

                                                                                                                             aaCTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGaaa                        <  4:417461/149‑1 (MQ=255)

                                                                                                                             aaCTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGaaa                        <  3:247147/149‑1 (MQ=255)

                                                                                                                               cTGGCAAGCCAGCAAAGCGGTGtgtcagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagggaatcatcgtagttacgtggcacggccttttgcaccagctgcgaaagcgcctgattttgataacgcacc                      <  4:103344‑M2/149‑128 (MQ=255)

                                                                                                                                tGGCAAGCCAGCAAAGCGGTGtgccagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagcgaatcatcgtagttacgtggcacggccttttgcaccagctgcgaaagcgcctgattttga                               >  3:1156322‑M2/1‑21 (MQ=255)

                                                                                                                                tGGCAAGCCAGCAAAGCGGTGtgccagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagcgaatcatcgtagttacgtggcacggccttttgcaccagctgcgaaagcgcctgattttga                               <  4:1156322‑M2/139‑119 (MQ=255)

                                                                                                                                 ggCAAGCCAGCAAAGCGGTGtgccagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagcgaatcatcgtagttacgtggcacggccttttgcaccagctgcgaaagcgcctgattttgataacgcaccac                    <  3:282912‑M2/149‑130 (MQ=255)

                                                                                                                                  gCAAGCCAGCAAAGCGGTGtgtcagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagcgaatcatcgtagttacgtggcacggccttttgcaccagctgcgaaagcgcctgattttgataacgcaccaca                   >  3:103344‑M2/1‑19 (MQ=255)

                                                                                                                                   cAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCa                  <  2:1163395/149‑1 (MQ=255)

                                                                                                                                    aaGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTgg                                                                                                      >  4:20932/1‑64 (MQ=255)

                                                                                                                                    aaGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTgg                                                                                                      <  3:20932/64‑1 (MQ=255)

                                                                                                                                    aaGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAGCGGCAAATCCGCCGCGAAAACGGcgagccga                                                                 >  1:179471/1‑101 (MQ=255)

                                                                                                                                    aaGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAGCGGCAAATCCGCCGCGAAAACGGcgagccga                                                                 <  2:179471/101‑1 (MQ=255)

                                                                                                                                    aaGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGtt                                                    <  2:370851/114‑1 (MQ=255)

                                                                                                                                    aaGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGtt                                                    >  1:370851/1‑114 (MQ=255)

                                                                                                                                    aaGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAg                 <  1:850687/149‑1 (MQ=255)

                                                                                                                                      gCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATccgcc                                                                                   >  2:530676/1‑81 (MQ=255)

                                                                                                                                       ccAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAGTTa              <  2:642159/149‑1 (MQ=255)

                                                                                                                                        cAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGc                                        >  4:526838/1‑122 (MQ=255)

                                                                                                                                        cAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGc                                        <  3:526838/122‑1 (MQ=255)

                                                                                                                                            aaaGCGGTGtgccagttgggcgggcagcgagagttgcgcgaggaatgctttactgtcacccggcagcgaatcatcgtagttacgtggcacggccttttgcaccagctgcgaaagcgcctgattttgataacgcaccacagtttcgagcg         >  4:282912‑M2/1‑9 (MQ=255)

                                                                                                                                            aaaGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAGTTACTGaa         >  4:85102/1‑149 (MQ=255)

                                                                                                                                                   tgtgCCACATCATGTGATCGTCGCTCAGGCGGCACGGGAATCTGGTTGGGGGCAACTGCAAACCCGCCGGGAAGACGGCGAACCGAGCTATAACCTGTTTGGTGTCAAAAACACTGGCAACTGGAAAGGGCCAGTTAATGAAAAcacca  <  4:862478/149‑1 (MQ=255)

AACTGTGGTGCGTTATCAAAATCAGGCGCTTTCGCAGCTGGTGCAAAAGGCCGTGCCACGTAACTACGATGATTCGCTGCCGGGTGACAGTAAAGCATTCCTCGCGCAACTCTCGCTGCCCGCCCAACTGGCAAGCCAGCAAAGCGGTGTGCCACATCATTTGATCCTCGCTCAGGCGGCACTGGAATCTGGTTGGGGGCAACGGCAAATCCGCCGCGAAAACGGCGAGCCGAGCTATAACCTGTTTGGTGTCAAAGCCTCTGGCAACTGGAAAGGGCCAGTTACTGAAATCACCA  >  NC_000913/1137727‑1138022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.