New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 125909759 (0.430)17 (0.140) 14/204 NT 22.5% intergenic (+28/+27) ychH/dauA DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter
?NC_000913 = 1259103 64 (0.510)intergenic (+34/+21) ychH/dauA DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter

CTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACGTTGCACACGCGCAGT  >  NC_000913/1258956‑1259244
                                                                                                                                                   |                                                                                                                                             
ctctGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGc                                                                                                                                              >  1:766384‑M2/1‑148 (MQ=255)
   tggctggcGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGctga                                                                                                                                           <  2:55378‑M2/149‑5 (MQ=255)
       tggcGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGctgactgg                                                                                                                                       >  1:55378‑M2/1‑141 (MQ=255)
       tggcGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGctgactgg                                                                                                                                       >  1:1273281‑M2/1‑141 (MQ=255)
                    tgtTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACt                                                                                                                          >  1:1042333/1‑149 (MQ=255)
                      ttGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCg                                                                                                                              >  2:465703/1‑143 (MQ=255)
                      ttGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCg                                                                                                                              <  1:465703/143‑1 (MQ=255)
                      ttGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTta                                                                                                                        <  4:1056943/149‑1 (MQ=255)
                               aTGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGc                                                                                                               >  2:1131630/1‑149 (MQ=255)
                                 gAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACtt                                                                                                                         >  3:647015/1‑137 (MQ=255)
                                 gAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACtt                                                                                                                         <  4:647015/137‑1 (MQ=255)
                                          tccgtccGTTACTGGGGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGTTAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCcgcgc                                                                                                    >  2:710485/6‑149 (MQ=255)
                                                  ttACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCAAAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTc                                                                                            <  4:391012/149‑1 (MQ=255)
                                                       ggtggGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGgaa                                                                                       >  3:1012180/1‑149 (MQ=255)
                                                               cGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCa                                                                               <  4:1012180/149‑1 (MQ=255)
                                                                  cACTATGACAAACGTTGCCGCCGTAGCGATAATCGCTGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGc                                                                            >  4:1065701/1‑149 (MQ=255)
                                                                       tGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTa                                                                                                                            <  4:770908/96‑1 (MQ=255)
                                                                       tGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTa                                                                                                                            >  3:770908/1‑96 (MQ=255)
                                                                         aCAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGgaag                                                                                      >  4:921620/1‑132 (MQ=255)
                                                                         aCAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGgaag                                                                                      <  3:921620/132‑1 (MQ=255)
                                                                         aCAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCgg                                                                     >  3:198421/1‑149 (MQ=255)
                                                                           aaaCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTta                                                                                                                        <  1:749546/96‑1 (MQ=255)
                                                                           aaaCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTta                                                                                                                        >  2:749546/1‑96 (MQ=255)
                                                                            aaCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAAt                                                                                                                                  <  4:12587/85‑1 (MQ=255)
                                                                            aaCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAAt                                                                                                                                  >  3:12587/1‑85 (MQ=255)
                                                                            aaCGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGAt                                                                  >  1:77289/1‑149 (MQ=255)
                                                                             aCGGTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATc                                                                 >  1:234532/1‑149 (MQ=255)
                                                                                ttGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGt                                                              <  1:1131630/149‑1 (MQ=255)
                                                                                ttGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGCCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGt                                                              <  3:1065701/149‑1 (MQ=255)
                                                                                    cgccgTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTc                                                                         >  4:639642/1‑134 (MQ=255)
                                                                                    cgccgTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTc                                                                         <  3:639642/134‑1 (MQ=255)
                                                                                             gATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAgcgc                                                 >  1:144943/1‑149 (MQ=255)
                                                                                               tAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGa                                               <  2:1042333/149‑1 (MQ=255)
                                                                                               tAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGa                                               <  1:710485/149‑1 (MQ=255)
                                                                                                 aTCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGc                                             >  1:1243610/1‑149 (MQ=255)
                                                                                                  tCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGcc                                            <  2:234532/149‑1 (MQ=255)
                                                                                                        tCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGt                                                              >  2:178023/1‑125 (MQ=255)
                                                                                                        tCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGt                                                              <  1:178023/125‑1 (MQ=255)
                                                                                                          aTAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGt                                                              <  1:1064378/123‑1 (MQ=255)
                                                                                                          aTAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGt                                                              >  2:1064378/1‑123 (MQ=255)
                                                                                                           tAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTcc                                                                        <  1:103336/112‑1 (MQ=255)
                                                                                                           tAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTcc                                                                        >  2:103336/1‑112 (MQ=255)
                                                                                                             gCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAg                                 <  2:1243610/149‑1 (MQ=255)
                                                                                                               tAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGtt                                                             <  4:967577/119‑1 (MQ=255)
                                                                                                               tAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGtt                                                             >  3:967577/1‑119 (MQ=255)
                                                                                                                aaCAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTgg                              >  3:294766/1‑149 (MQ=255)
                                                                                                                 aCAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGtt                                                             >  4:237886/1‑117 (MQ=255)
                                                                                                                 aCAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGtt                                                             <  3:237886/117‑1 (MQ=255)
                                                                                                                 aCAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGc                             >  2:886932/1‑149 (MQ=255)
                                                                                                                 aCAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGc                             <  4:198421/149‑1 (MQ=255)
                                                                                                                  cAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCt                            <  2:144943/149‑1 (MQ=255)
                                                                                                                   aaaTAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCt                            <  2:181591/148‑1 (MQ=255)
                                                                                                                   aaaTAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCt                            >  1:181591/1‑148 (MQ=255)
                                                                                                                    aataatGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCa                                                     >  4:1024434/1‑122 (MQ=255)
                                                                                                                    aataatGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCa                                                     <  3:1024434/122‑1 (MQ=255)
                                                                                                                    aataatGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTgg                          >  3:1113533/1‑149 (MQ=255)
                                                                                                                      taatGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTta                                                                                                                        <  4:491695/53‑1 (MQ=255)
                                                                                                                      taatGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTta                                                                                                                        >  3:491695/1‑53 (MQ=255)
                                                                                                                          gCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTcc                    <  1:886932/149‑1 (MQ=255)
                                                                                                                             gTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACg                 >  2:589083/1‑149 (MQ=255)
                                                                                                                              tttGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATa                                         >  2:690790/1‑124 (MQ=255)
                                                                                                                              tttGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATa                                         <  1:690790/124‑1 (MQ=255)
                                                                                                                               ttGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACGtt               <  4:294766/149‑1 (MQ=255)
                                                                                                                                   tGACCAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtggcgaacccaccagtaacggtcg                                             >  3:303145‑M2/1‑17 (MQ=255)
                                                                                                                                   tGACCAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtggcgaacccaccagtaacggtcg                                             <  4:303145‑M2/115‑99 (MQ=255)
                                                                                                                                    gACCAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtggc                                                                 <  2:455469‑M2/94‑79 (MQ=255)
                                                                                                                                    gACCAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtggc                                                                 >  1:455469‑M2/1‑16 (MQ=255)
                                                                                                                                     aCCAGTCAGTTTGCGctgagtggtcagcaaactgcattatttgttagctatggcggcgattatcgctacggcggcaacgtttgtcatagtggcgaacccaccagtaacggtcgcacacctgttcatgcccgccaacacgggcacccgcc         <  4:1242537‑M2/149‑135 (MQ=255)
                                                                                                                                     aCCAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtgg                                                                  >  4:621187‑M2/1‑15 (MQ=255)
                                                                                                                                     aCCAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtgg                                                                  <  3:621187‑M2/92‑78 (MQ=255)
                                                                                                                                      ccAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtggcgaacccaccagtaacggtcgcacacctgttcatgcccg                           <  3:644931‑M2/130‑117 (MQ=255)
                                                                                                                                      ccAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtggcgaacccaccagtaacggtcgcacacctgttcatgcccg                           >  4:644931‑M2/1‑14 (MQ=255)
                                                                                                                                      ccAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtggcgaacccac                                                         >  4:298285‑M2/1‑14 (MQ=255)
                                                                                                                                      ccAGTCAGTTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgtcatagtggcgaacccac                                                         <  3:298285‑M2/100‑87 (MQ=255)
                                                                                                                                       cagtcagtTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgt                                                                          >  2:863688‑M2/1‑13 (MQ=255)
                                                                                                                                       cagtcagtTTGCGctgactggtcagcaaactgcattatttgttagctatgacggcgattatcgctacggcggcaacgtttgt                                                                          <  1:863688‑M2/82‑70 (MQ=255)
                                                                                                                                         gtcagtTTGCGctgactggtcagcaaactgcattattt                                                                                                                    >  4:31365‑M2/1‑11 (MQ=255)
                                                                                                                                         gtcagtTTGCGctgactggtcagcaaactgcattattt                                                                                                                    <  3:31365‑M2/38‑28 (MQ=255)
                                                                                                                                         gtcagtTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGaa                                                          >  4:27175/1‑96 (MQ=255)
                                                                                                                                         gtcagtTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGaa                                                          <  3:27175/96‑1 (MQ=255)
                                                                                                                                          tcagtTTGCGctgactggtcagcaaactgcattattt                                                                                                                    >  1:572408‑M2/1‑10 (MQ=255)
                                                                                                                                          tcagtTTGCGctgactggtcagcaaactgcattattt                                                                                                                    <  2:572408‑M2/37‑28 (MQ=255)
                                                                                                                                          tcagtTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAg                                        >  4:951154/1‑113 (MQ=255)
                                                                                                                                          tcagtTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACGTTGCACACGCGCa    <  2:77289/149‑1 (MQ=255)
                                                                                                                                          tcagtTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACGTTGCACACGCGCa    >  3:1107655/1‑149 (MQ=255)
                                                                                                                                          taagtTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGTCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAg                                        <  3:951154/111‑1 (MQ=255)
                                                                                                                                            agtTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACGTTGCACACGCGCAGt  >  1:1132182/1‑149 (MQ=255)
                                                                                                                                               ttGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACGTTGc             <  2:164625/135‑1 (MQ=255)
                                                                                                                                               ttGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACGTTGc             >  1:164625/1‑135 (MQ=255)
                                                                                                                                                   gcTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCgg                                                               >  4:753304/1‑81 (MQ=255)
                                                                                                                                                   gcTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCgg                                                               <  3:753304/81‑1 (MQ=255)
                                                                                                                                                   gcTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTc                     <  3:1353338/123‑1 (MQ=255)
                                                                                                                                                   gcTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTc                     >  4:1353338/1‑123 (MQ=255)
                                                                                                                                                   |                                                                                                                                             
CTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAATCTCGTACTTATAAATCCGCCATCGCCGCGCGACGATTCGGGAAGAACGCCAGGCGTCCCGGGATCGGTTGAATGCCAGCGCGAGCCATAGTGCGCAGTGGCTGGAATTCCACGTTGCACACGCGCAGT  >  NC_000913/1258956‑1259244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.