BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1648259	96 (0.700)	11 (0.090)	7/212	NT	10.8%	coding (326/408 nt)	dicA	Qin prophage; putative regulator for DicB
*	?	NC_000913	= 1648265	92 (0.710)	11 (0.090)	7/212	NT	10.8%	coding (332/408 nt)	dicA	Qin prophage; putative regulator for DicB

Only 100 of 128 total aligned reads displayed.

GGATTCTATTTGGCGATGAAGACAAGCAACCAACACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGAT  >  NC_000913/1648127‑1648410

ggATTCTATTTGGCGATGAAGACAAGCAACCAACACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGa                                                                                                                                         <  2:797102/149‑1 (MQ=255)

  aTTCTATTTGGCGATGAAGACAAGCAACCAACACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGt                                                                                                                                       <  3:626051/149‑1 (MQ=255)

                   aGACAAGCAACCAACACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgc                                                                                                                                                 <  4:652539‑M2/122‑3 (MQ=255)

                    gACAAGCAACCAACACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgcga                                                                                                                                               >  3:1144155‑M2/1‑119 (MQ=255)

                    gACAAGCAACCAACACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgcga                                                                                                                                               <  4:1144155‑M2/123‑5 (MQ=255)

                    gACAAGCAACCAACACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAAct                                                                                                                     >  3:1447245/1‑149 (MQ=255)

                           aaccaacACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAAt                                                                                                                                                   >  4:126087/1‑112 (MQ=255)

                               aacACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgcg                                                                                                                                                >  2:314332‑M2/1‑108 (MQ=255)

                               aacACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgcg                                                                                                                                                <  1:314332‑M2/111‑4 (MQ=255)

                                acacCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCttt                                                                                                                 <  3:808015/141‑1 (MQ=255)

                                acacCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCttt                                                                                                                 >  4:808015/1‑141 (MQ=255)

                                 caccacCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTa                                                                                                        <  3:1190441/149‑1 (MQ=255)

                                   ccaccTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCttt                                                                                                                 <  4:1099773/138‑1 (MQ=255)

                                     accTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAAct                                                                                                                     <  1:426371/132‑1 (MQ=255)

                                            gagaAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgcga                                                                                                                                               <  1:331552‑M2/99‑5 (MQ=255)

                                            gagaAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgcga                                                                                                                                               >  2:331552‑M2/1‑95 (MQ=255)

                                                  ccAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCaa                                                                                                                           >  1:1459708/1‑113 (MQ=255)

                                                  ccAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCaa                                                                                                                           <  2:1459708/113‑1 (MQ=255)

                                                     gTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTa                                                                                                        >  1:898490/1‑129 (MQ=255)

                                                     gTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTa                                                                                                        <  2:898490/129‑1 (MQ=255)

                                                       tGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCTAGTAAAAAACTTCAATAAActc                                                                                                                    <  4:1065466/115‑1 (MQ=255)

                                                       tGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAActc                                                                                                                    >  3:1065466/1‑115 (MQ=255)

                                                          cTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTAc                                                                                                       <  3:898282/125‑1 (MQ=255)

                                                            tATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTaaaaaa                                                                                                                                 >  4:223942/1‑97 (MQ=255)

                                                            tATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTaaaaaa                                                                                                                                 <  3:223942/97‑1 (MQ=255)

                                                             aTCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATaaaa                                                                            >  4:1445823/1‑149 (MQ=255)

                                                                ccccAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGGATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGAt                                                                         >  2:910369/1‑149 (MQ=255)

                                                                ccccAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACtt                                                                                                                              <  2:612154/96‑1 (MQ=255)

                                                                ccccAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACtt                                                                                                                              >  1:612154/1‑96 (MQ=255)

                                                                  ccAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATaaaa                                                                            >  4:887652/1‑144 (MQ=255)

                                                                  ccAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATaaaa                                                                            <  3:887652/144‑1 (MQ=255)

                                                                  ccAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATaa                                                                       >  1:794824/1‑149 (MQ=255)

                                                                    aaaGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAg                                                                                                                                        <  3:569289/82‑1 (MQ=255)

                                                                      aGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGGATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAAcatc                                                                   <  1:910369/149‑1 (MQ=255)

                                                                      aGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAAcatc                                                                   <  2:794824/149‑1 (MQ=255)

                                                                         aCTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACatcatc                                                                <  3:495574/149‑1 (MQ=255)

                                                                          cTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGa                                                                                                                                         >  4:1088520/1‑75 (MQ=255)

                                                                          cTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGa                                                                                                                                         <  3:1088520/75‑1 (MQ=255)

                                                                           tAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCaa                                                                                                                           >  4:1287340/1‑88 (MQ=255)

                                                                           tAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCaa                                                                                                                           <  3:1287340/88‑1 (MQ=255)

                                                                            agagCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAAt                                                             <  4:1447245/149‑1 (MQ=255)

                                                                               gCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGa                                                                                                                                         <  2:335725/70‑1 (MQ=255)

                                                                               gCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATa                                                                        <  1:102297/135‑1 (MQ=255)

                                                                                  ccTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAAcat                                                                    <  1:421886/136‑1 (MQ=255)

                                                                                  ccTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAAcat                                                                    >  2:421886/1‑136 (MQ=255)

                                                                                   cTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTAt                                                      >  2:554599/1‑149 (MQ=255)

                                                                                   cTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTAt                                                      >  4:77346/1‑149 (MQ=255)

                                                                                    ttGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGa                                                           >  3:429991/1‑143 (MQ=255)

                                                                                    ttGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGa                                                           <  4:429991/143‑1 (MQ=255)

                                                                                    ttGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATc                                                     >  2:1402266/1‑149 (MQ=255)

                                                                                    ttGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATc                                                     <  3:77346/149‑1 (MQ=255)

                                                                                     tGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCt                                                    <  3:1445823/149‑1 (MQ=255)

                                                                                            tttAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgcgag                                                                                                                                              <  1:1377657‑M2/52‑6 (MQ=255)

                                                                                            tttAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATgcgag                                                                                                                                              >  2:1377657‑M2/1‑47 (MQ=255)

                                                                                            tttAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCttt                                                                                                                 >  4:547219/1‑81 (MQ=255)

                                                                                            tttAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCttt                                                                                                                 <  3:547219/81‑1 (MQ=255)

                                                                                            tttAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACca                                             <  1:1402266/149‑1 (MQ=255)

                                                                                               aaTGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCaa                                                                                                                           >  1:1169470/1‑68 (MQ=255)

                                                                                               aaTGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCaa                                                                                                                           <  2:1169470/68‑1 (MQ=255)

                                                                                                aTGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCtt                                                                                                                  <  4:107005/76‑1 (MQ=255)

                                                                                                aTGCACTGCCAGAAGCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCtt                                                                                                                  >  3:107005/1‑76 (MQ=255)

                                                                                                 tGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGa                                                           >  4:515738/1‑130 (MQ=255)

                                                                                                    aCTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTa                                                                                                        >  4:1104684/1‑82 (MQ=255)

                                                                                                    aCTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTa                                                                                                        <  3:1104684/82‑1 (MQ=255)

                                                                                                        ccAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGt                                 <  1:554599/149‑1 (MQ=255)

                                                                                                         cAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAAt                                                                                                          >  4:1432313/1‑75 (MQ=255)

                                                                                                              tCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATaaaa                                                                            <  1:1400142/100‑1 (MQ=255)

                                                                                                              tCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATaaaa                                                                            >  2:1400142/1‑100 (MQ=255)

                                                                                                                  aaCAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCtata                         >  4:260614/1‑147 (MQ=255)

                                                                                                                  aaCAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGc                       >  3:1346117/1‑149 (MQ=255)

                                                                                                                    cAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCAt                     <  4:1346117/149‑1 (MQ=255)

                                                                                                                      ggATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTAc                                               >  1:139978/1‑121 (MQ=255)

                                                                                                                         tACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATaa                                                                       >  2:728609/1‑94 (MQ=255)

                                                                                                                         tACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATaa                                                                       <  1:728609/94‑1 (MQ=255)

                                                                                                                          aCCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCtttt                                                 <  2:152084/115‑1 (MQ=255)

                                                                                                                           cccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTa                                                       >  4:448588/1‑108 (MQ=255)

                                                                                                                           cccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTa                                                       <  3:448588/108‑1 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATgcgagctgggtatcctgttctgattctggcagtgcattaaacagctcaaggagctctagttctttgggggataaggcaactggcttc                                                            >  2:866410‑M2/1‑15 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATgcgagctgggtatcctgttctgattctggcagtgcattaaacagctcaaggagctctagttctttgggggataaggcaactggcttc                                                            <  1:866410‑M2/102‑88 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATgcgagctgggtatcctgttctgattctggcagtgcattaaacag                                                                                                       <  1:98987‑M2/59‑45 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATgcgagctgggtatcctgttctgattctggcagtgcattaaacag                                                                                                       >  2:98987‑M2/1‑15 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATgcgagctgggtatcctgttctgattctggcagtgcattaaacag                                                                                                       <  3:180865‑M2/59‑45 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATaaa                                                                                                                       >  3:1089028/1‑43 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATaaaa                                                                            >  2:1003530/1‑86 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATaaaa                                                                            <  1:1003530/86‑1 (MQ=255)

                                                                                                                            ccAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATc             >  3:771599/1‑149 (MQ=255)

                                                                                                                             cAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCa            <  4:771599/149‑1 (MQ=255)

                                                                                                                              aGCTCGCCGAAATgcgagctgggtatcctgttctgattctggcagtgcattaaacagctcaaggagctctagttctttgggggataaggcaactggcttctcaacaggtggtgttggttg                                        >  4:875697‑M2/1‑13 (MQ=255)

                                                                                                                              aGCTCGCCGAAATgcgagctgggtatcctgttctgattctggcagtgcattaaacagctcaaggagctctagttctttgggggataaggcaactggcttctcaacaggtggcgttggttg                                        <  3:875697‑M2/120‑108 (MQ=255)

                                                                                                                              aGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGa                                                           >  3:1371183/1‑101 (MQ=255)

                                                                                                                                 tCGCCGAAATgcgagctgggtatcctgttctgattctggcagtgcattaaacagctcaaggagctctagttctttgggggataaggcaactggcttctcaacaggtggtgttggttgcttgtcttcatcgccaaatagaatccatgttg        <  4:1174331‑M2/149‑140 (MQ=255)

                                                                                                                                 tCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATc             >  3:1293042/1‑144 (MQ=255)

                                                                                                                                 tCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATc             <  4:1293042/144‑1 (MQ=255)

                                                                                                                                   gCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATaa                                                                       >  3:548844/1‑84 (MQ=255)

                                                                                                                                   gCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATaa                                                                       <  4:548844/84‑1 (MQ=255)

                                                                                                                                     cGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGc                             <  3:742226/124‑1 (MQ=255)

                                                                                                                                     cGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGc                             >  4:742226/1‑124 (MQ=255)

                                                                                                                                      gAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACt          <  2:139882/142‑1 (MQ=255)

                                                                                                                                       aaaTGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGat  >  2:5055/1‑149 (MQ=255)

                                                                                                                                          tGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATaaaa                                                                            <  1:242195/72‑1 (MQ=255)

GGATTCTATTTGGCGATGAAGACAAGCAACCAACACCACCTGTTGAGAAGCCAGTTGCCTTATCCCCCAAAGAACTAGAGCTCCTTGAGCTGTTTAATGCACTGCCAGAATCAGAACAGGATACCCAGCTCGCCGAAATGCGAGCTCGAGTAAAAAACTTCAATAAACTCTTTGAAGAATTACTAAAAGCCCGTCAGCGGACAAATAAAAGATAACATCATCAATGAGTTATCTTTTACCACATCAATTATGTTAGCTATAGCATACAAAATCACTTGACCGAT  >  NC_000913/1648127‑1648410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.