New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2059931	106 (0.770)	6 (0.040) +A	4/224	NT	8.1%	intergenic (+5/+33)	asnU/cbl	tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator
	?	NC_000913	= 2062369	31 (0.220)					intergenic (+34/+22)	asnV/ldtA	tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein

ACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGATAAACGCCCGCAAAGATGG  >  NC_000913/2062255‑2062510                                                                                                                   |                                                                                                                                              acGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGt                                                                                                             >  2:66243/1‑149 (MQ=255)                ttCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCttttt                                                                                                                                               >  4:591706/1‑100 (MQ=255)                ttCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCttttt                                                                                                                                               <  3:591706/100‑1 (MQ=255)                                  ggACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTccc                                                                            >  1:376905/1‑149 (MQ=255)                                     cTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGAt                                                                         <  2:376905/149‑1 (MQ=255)                                                 aTGTCACTGGTTCGAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAAc                                                             <  1:66243/149‑1 (MQ=255)                                                              gAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGt                                                                   >  1:1035310/1‑130 (MQ=255)                                                              gAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGt                                                                   <  2:1035310/130‑1 (MQ=255)                                                                                       aaaaaaGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTCGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGtt                       >  1:438055/1‑149 (MQ=255)                                                                                         aaaaGCCTGCTTTCTAGCAGGCTTTTTtgaatttggctcctctgactggactcgaaccagtgacatacggattaacagtccgccgttctaccgactgaa                                                                       <  1:404181‑M2/99‑73 (MQ=255)                                                                                         aaaaGCCTGCTTTCTAGCAGGCTTTTTtgaatttggctcctctgactggactcgaaccagtgacatacggattaacagtccgccgttctaccgactgaa                                                                       >  2:404181‑M2/1‑27 (MQ=255)                                                                                         aaaaGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAActtc                                >  1:228873/1‑138 (MQ=255)                                                                                         aaaaGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAActtc                                <  2:228873/138‑1 (MQ=255)                                                                                             gCCTGCTTTCTAGCAGGCTTTTTtgaatttggctcctctgactggactcgaaccagt                                                                                                             >  4:559605‑M2/1‑23 (MQ=255)                                                                                             gCCTGCTTTCTAGCAGGCTTTTTtgaatttggctcctctgactggactcgaaccagt                                                                                                             <  3:559605‑M2/57‑35 (MQ=255)                                                                                              ccTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGATAAAc                >  1:1119985/1‑149 (MQ=255)                                                                                               cTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACAt                                                                                                                 >  3:1136863/1‑51 (MQ=255)                                                                                               cTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACAt                                                                                                                 <  4:1136863/51‑1 (MQ=255)                                                                                                tGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATc                                                                        >  2:141932/1‑91 (MQ=255)                                                                                                tGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATc                                                                        <  1:141932/91‑1 (MQ=255)                                                                                                tGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGATAAACGc              >  2:754434/1‑149 (MQ=255)                                                                                                 gCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGATAAACGcc             >  4:345376/1‑149 (MQ=255)                                                                                                   tttCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTcc                                                                             >  3:1281060/1‑83 (MQ=255)                                                                                                   tttCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTcc                                                                             <  4:1281060/83‑1 (MQ=255)                                                                                                         gCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAg                                                                                    >  4:670978/1‑70 (MQ=255)                                                                                                         gCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAg                                                                                    <  3:670978/70‑1 (MQ=255)                                                                                                          cAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGATAAACGCCCGCAAAGAt    >  4:689976/1‑149 (MQ=255)                                                                                                           aGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGAttt                                           <  2:1229705/109‑1 (MQ=255)                                                                                                           aGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGAttt                                           >  1:1229705/1‑109 (MQ=255)                                                                                                           aGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTAc                                         >  2:1272865/1‑111 (MQ=255)                                                                                                           aGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTAc                                         <  1:1272865/111‑1 (MQ=255)                                                                                                            ggCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGAt                    <  3:640966/131‑1 (MQ=255)                                                                                                            ggCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGAt                    >  4:640966/1‑131 (MQ=255)                                                                                                            ggCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGATAAACGCCCGCAAAGATgg  <  3:689976/149‑1 (MQ=255)                                                                                                            ggCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGATAAACGCCCGCAAAGATgg  >  1:965592/1‑149 (MQ=255)                                                                                                             gCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAAc                                   >  4:513110/1‑115 (MQ=255)                                                                                                             gCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAAc                                   <  3:513110/115‑1 (MQ=255)                                                                                                              cTTTTTtgaatttggctcctctgactggactcgaaccagtgacatacggattaacagtccgccgttctaccgactgaactacaga                                                                <  1:885088‑M2/85‑80 (MQ=255)                                                                                                              cTTTTTtgaatttggctcctctgactggactcgaaccagtgacatacggattaacagtccgccgttctaccgactgaactacaga                                                                >  2:885088‑M2/1‑6 (MQ=255)                                                                                                                   |                                                                                                                                              ACGATTCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCAAATTCAAAAAAGCCTGCTTTCTAGCAGGCTTTTTGCTTTCTAATTACCAACGCTCTTAAAACATCTGTCTTGAACCAGAACTAATTTGCACAGGCATTCCCGATCGACGTTGCAACGCAGCATTTGCGCGATTTACATCAACTTCTTGCCCGTTGATAAACGCCCGCAAAGATGG  >  NC_000913/2062255‑2062510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.