New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3619878 =	NA (NA)	8 (0.060)	5/208	NT	100%	coding (687/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3619892 =	0 (0.000)					coding (701/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGCTCGGTTGGTGTGAGCGGGTGCCGGAAGCGGATGAGGTGCTGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATAT  >  NC_000913/3619745‑3620040                                                                                                                                                    |                                                                                                                                                     ggcagggtatcaggaaaagcggacggttccgtcccgccggaaatggcctgctgccaggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTc                                                                                                                                                     <  1:771617‑M2/2‑1 (MQ=255)   cagggtatcaggaaaagcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCAc                                                                                                                                                   <  4:1205044‑M2/4‑1 (MQ=255)   cagggtatcaggaaaagcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCAc                                                                                                                                                   <  3:768348‑M2/4‑1 (MQ=255)      ggtatcaggaaaagcggacggttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCgg                                                                                                                                                >  3:940896‑M2/143‑149 (MQ=255)                           ttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatt                                                                                                                                                      >  1:1313649‑M2/122‑122 (MQ=255)                           ttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatt                                                                                                                                                      <  2:1313649‑M2/1‑1 (MQ=255)                           ttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGc                                                                                                                                               >  1:1357893‑M2/122‑129 (MQ=255)                           ttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGc                                                                                                                                               >  4:851725‑M2/122‑129 (MQ=255)                           ttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGc                                                                                                                                               <  3:851725‑M2/8‑1 (MQ=255)                           ttccgtcccgccggaaatggcctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCACCGGc                                                                                                                                               <  2:1357893‑M2/8‑1 (MQ=255)                                               cctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCAc                                                                                                                                                   <  2:316625‑M2/4‑1 (MQ=255)                                               cctgctgccgggcttcttctgcccgctgcgcctgcgtggtcagtaccagccggaagtgacgccaggcaccatccgtcacgccggtgatttcgccgctgaatTCAc                                                                                                                                                   >  1:316625‑M2/102‑105 (MQ=255)                                                                                                                                cggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGc                                                                                        >  2:320022‑M2/21‑83 (MQ=255)                                                                                                                                cggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCGGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGc                                                                                        <  1:320022‑M2/63‑1 (MQ=255)                                                                                                                                 ggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGa                                                                                                       >  4:462261‑M2/20‑67 (MQ=255)                                                                                                                                 ggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGa                                                                                                       <  3:462261‑M2/48‑1 (MQ=255)                                                                                                                                 ggtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAgaagaa                                                                             <  3:781015‑M2/74‑1 (MQ=255)                                                                                                                                 ggtgatttcgccgctgaatTCACCGGCGTGACAGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAgaagaa                                                                             >  4:781015‑M2/20‑93 (MQ=255)                                                                                                                                  gtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCCGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGc                                                               >  2:663531‑M2/19‑106 (MQ=255)                                                                                                                                  gtgatttcgccgctgaatTCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCCGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGc                                                               <  1:663531‑M2/88‑1 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATa                         >  3:1329535‑M2/1‑126 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATa                         <  4:1329535‑M2/126‑1 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATAcc                       >  1:187431‑M2/1‑128 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATAcc                       <  2:187431‑M2/128‑1 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAatat  >  3:963169‑M2/1‑149 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAatat  <  1:981289‑M2/149‑1 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAatat  >  4:1351574‑M2/1‑149 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAatat  <  3:1341336‑M2/149‑1 (MQ=255)                                                                                                                                                    TCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAatat  >  3:1277832‑M2/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGCTCGGTTGGTGTGAGCGGGTGCCGGAAGCGGATGAGGTGCTGCCTGCGCCGCTGCCGCCGTACCGGGTACTGACCGGGCTGGTGGACCGCTTCGGGCGCACACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCTGGCGTCACTTCCGGCTGGTACTGACCACGCAGGCGCAGCGGGCAGAAGAAGCCCGGCAGCAGGCCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATAT  >  NC_000913/3619745‑3620040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.