| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,378,284 | T→G | 11.2% | K123T (AAA→ACA) ‡ | rplM ← | 50S ribosomal subunit protein L13 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,378,284 | 0 | T | G | 11.2% | 570.0 / 52.7 | 179 | K123T (AAA→ACA) ‡ | rplM | 50S ribosomal subunit protein L13 |
| Reads supporting (aligned to +/- strand): ref base T (82/76); new base G (10/10); total (93/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 190 total aligned reads displayed.
CCGGTTTGATGAAAACGCGAGCTGCGGAACTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTGTGGTGATAGTA > NC_000913/3378138‑3378432 | ccGGTTTGATGAAAACGCGAGCTGCGGAACTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTc < 2:980366/149‑1 (MQ=255) cTGCGGAACTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTc < 2:1383953/128‑1 (MQ=255) gCGGAACTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGAcc < 1:1202706/149‑1 (MQ=255) ggAACTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACttt > 2:646413/1‑123 (MQ=255) gAACTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTGAAAGTTTACg < 3:965691/131‑1 (MQ=255) aCTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAg > 3:703635/1‑147 (MQ=255) aCTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCg < 3:1172344/149‑1 (MQ=255) ttttGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCa < 3:982549/120‑1 (MQ=255) ttttGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGaa < 2:1232422/130‑1 (MQ=255) gTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCtttt < 1:162178/141‑1 (MQ=255) gTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCtttt > 2:162178/1‑141 (MQ=255) aTTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGaa < 1:1430970/106‑1 (MQ=255) ttGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCAc < 2:150422/113‑1 (MQ=255) ttGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTCAACcg > 2:1130701/1‑149 (MQ=255) gATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCtt < 2:279234/141‑1 (MQ=255) gATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCtt > 1:279234/1‑141 (MQ=255) tttCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGAtt > 3:1227730/1‑149 (MQ=255) cATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATca > 3:161401/1‑149 (MQ=255) aTTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATcac > 4:27966/1‑149 (MQ=255) cTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGAt < 1:765071/135‑1 (MQ=255) cTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGAt > 2:765071/1‑135 (MQ=255) cTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATcac < 2:247898/144‑1 (MQ=255) tataATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCtttt < 1:1010655/111‑1 (MQ=255) tataATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCttt < 4:1083310/110‑1 (MQ=255) tataATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCttt > 3:1083310/1‑110 (MQ=255) tataATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTg < 1:1338331/112‑1 (MQ=255) tCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTg > 3:808174/1‑107 (MQ=255) tCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTg < 4:808174/107‑1 (MQ=255) tCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCaa > 4:388785/1‑134 (MQ=255) tCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGAc > 3:1427991/1‑149 (MQ=255) cccGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACg > 1:1052159/1‑149 (MQ=255) cccGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACg > 2:477794/1‑149 (MQ=255) ccGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGtt < 4:960514/72‑1 (MQ=255) ccGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACcgcg > 2:1001499/1‑125 (MQ=255) ccGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACcgcg < 1:1001499/125‑1 (MQ=255) gATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCttt > 1:72450/1‑116 (MQ=255) aTTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGa < 1:477794/149‑1 (MQ=255) aGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCa < 4:161401/149‑1 (MQ=255) gATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCaa > 1:927522/1‑149 (MQ=255) gATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCaa > 4:758887/1‑149 (MQ=255) tGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAatc < 2:1018945/149‑1 (MQ=255) tCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCt < 1:621835/90‑1 (MQ=255) tCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGCCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAatcat > 1:251732/1‑149 (MQ=255) cAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAatcatc > 3:601143/1‑149 (MQ=255) aaGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCaa < 1:1146884/96‑1 (MQ=255) aaGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCaa > 2:1146884/1‑96 (MQ=255) aaGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCAtct > 2:96476/1‑149 (MQ=255) aaGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTGAAAGTTTACgc < 2:887820/64‑2 (MQ=38) aaGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTGAAAGTTTACgc > 1:887820/1‑63 (MQ=38) aaGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTATCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGATGGCGAGCAATCAtct > 2:423774/1‑149 (MQ=255) aGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCaa < 3:743269/118‑1 (MQ=255) aGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCaa > 4:743269/1‑118 (MQ=255) aaCTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCtt < 3:758887/149‑1 (MQ=255) aCTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGCTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTc < 4:965882/149‑1 (MQ=255) cTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCt > 1:348094/1‑83 (MQ=255) cTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCt < 2:348094/83‑1 (MQ=255) ttGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACa < 3:1137333/92‑1 (MQ=255) ttGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACa > 4:1137333/1‑92 (MQ=255) ttGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACa < 1:650878/92‑1 (MQ=255) tGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCaaa < 4:601143/149‑1 (MQ=255) gtgCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGt < 3:27966/149‑1 (MQ=255) gcgTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCaa < 2:1128967/97‑1 (MQ=255) gcgTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGAt < 2:927522/149‑1 (MQ=255) gcgTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGAt > 4:719091/1‑149 (MQ=255) gcgTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGAt < 4:1427991/149‑1 (MQ=255) cgTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATa < 2:1420518/149‑1 (MQ=255) gTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAGCCGCGATTTCaa < 4:1163222/95‑1 (MQ=255) gTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATaccac > 1:1407596/1‑149 (MQ=255) ttGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGa > 2:449886/1‑111 (MQ=255) gtgCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCt > 4:340955/1‑98 (MQ=255) tgCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTaa > 2:1174557/1‑76 (MQ=255) gCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGAtg > 3:275725/1‑149 (MQ=255) gCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGAtg > 2:954149/1‑149 (MQ=255) tCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGAtgtg > 4:545112/1‑149 (MQ=255) gTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGc < 1:954149/149‑1 (MQ=255) ttccgTAAACTGAAAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATa < 2:509919/128‑1 (MQ=255) ttccgTAAACTGAAAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATa > 1:509919/4‑131 (MQ=255) ccGCGTAAACTTTCGGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGgtg > 4:329849/1‑149 (MQ=255) ccGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAat > 3:336257/1‑103 (MQ=255) ccGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGc > 1:1240513/1‑121 (MQ=255) cgcgTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGtt > 3:434697/1‑125 (MQ=255) cgTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTgtgg < 2:1266258/149‑1 (MQ=255) cgTAAACTGAAAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGa > 3:356927/1‑95 (MQ=255) cgTAAACTGAAAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGAtg > 1:460256/1‑137 (MQ=255) gTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCaa > 4:61915/1‑74 (MQ=255) gTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCaa < 3:61915/74‑1 (MQ=255) gTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAg > 3:1037727/1‑86 (MQ=255) gTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAg < 4:1037727/86‑1 (MQ=255) gTAAACTGAAAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCt > 2:239327/1‑58 (MQ=38) gTAAACTGAAAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCt < 1:239327/58‑1 (MQ=38) gTAAACTGAAAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCt < 4:949726/58‑1 (MQ=38) aaaCTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTGTGGTGa > 3:851361/1‑149 (MQ=255) aaCTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGAt < 2:692846/123‑1 (MQ=255) aaCTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTGTGGTGAt < 1:159953/149‑1 (MQ=255) aCTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTGTGGTGATa > 4:1378875/1‑149 (MQ=255) aCTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATATCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGCTCGCTTGTTTGATACCACCGAGGTGGCCGGTGTGGTGATa < 1:423774/149‑1 (MQ=255) cTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTGTGGTGATAg < 2:744041/149‑1 (MQ=255) tttCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGAt > 3:959652/1‑120 (MQ=255) ttCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTGTGGTGATAGTa < 1:1130701/149‑1 (MQ=255) ttCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTGTGGGGATAGTa > 1:440711/1‑149 (MQ=255) | CCGGTTTGATGAAAACGCGAGCTGCGGAACTTTTGCGGCGACCAGTGCCGTAGTATTGATTTTCAGCCATTGCCTATAATCCCGATTAGATGTCAAGAACTTGCGGTTGCTGTGCCGCGTGGTTGTGCTCGTTACCCGCGTAAACTTTCAGTTTACGGAACATAGCACGACCCAGCGGGCCTTTTGGCAACATGCCTTTAACCGCGATTTCAATCACACGCTCAGGACGGCGAGCAATCATCTCTTCAAAGGTCGCTTGTTTGATACCACCGATGTGGCCGGTGTGGTGATAGTA > NC_000913/3378138‑3378432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |