| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,111,823 | C→T | 5.4% | pseudogene (268/963 nt) | yghE ← | pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,111,823 | 0 | C | T | 5.4% | 437.8 / 8.8 | 129 | pseudogene (268/963 nt) | yghE | pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
| Reads supporting (aligned to +/- strand): ref base C (61/61); new base T (4/3); total (65/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 130 total aligned reads displayed.
GCAGAGCTGTAACGGTCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCAATGTTGCGCAT > NC_000913/3111679‑3111970 | gCAGAGCTGTAACGGTCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGgcg > 2:1081821/1‑149 (MQ=255)gCAGAGCTGTAACGGTCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGgcg > 4:1405367/1‑149 (MQ=255) agCTGTAACGGTCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTcc < 2:1405658/149‑1 (MQ=255) agCTGTAACGGTCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTcc < 1:206847/149‑1 (MQ=255) tAACGGTCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATccc > 1:1276378/1‑149 (MQ=255) ggTCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGc < 2:677383/149‑1 (MQ=255) tCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCAt > 3:1296487/1‑149 (MQ=255) aGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTc > 2:398491/1‑149 (MQ=255) gCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCAt > 1:437546/1‑149 (MQ=255) cGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATc < 4:201227/149‑1 (MQ=255) ttCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGa > 4:677886/1‑149 (MQ=255) gTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGc < 1:1081821/149‑1 (MQ=255) tCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTc < 4:82376/123‑1 (MQ=255) tCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTc > 3:82376/1‑123 (MQ=255) tCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCa > 4:814862/1‑149 (MQ=255) cgcCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATa < 4:1343525/149‑1 (MQ=255) gcCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGa > 3:1046696/1‑146 (MQ=255) gcCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGa < 4:1046696/146‑1 (MQ=255) gcCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATaa < 2:1334709/149‑1 (MQ=255) gCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGCACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATg < 4:1429033/135‑1 (MQ=255) gCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATg > 3:1429033/1‑135 (MQ=255) gCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCg > 4:1405624/1‑149 (MQ=255) cccATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGt < 3:814862/149‑1 (MQ=255) aTGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTgc < 3:307788/149‑1 (MQ=255) aTGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTgc < 3:272230/149‑1 (MQ=255) gCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCGGGCTGGCGCtgg < 1:185890/109‑3 (MQ=255) gCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCGGGCTGGCGCtgg > 2:185890/1‑107 (MQ=255) gATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAAc < 3:1381599/137‑1 (MQ=255) aTAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCATATAACCCGTTGCGCATCg > 1:207201/1‑149 (MQ=255) aTAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCa < 1:462145/146‑1 (MQ=255) cTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAg < 4:1296487/149‑1 (MQ=255) ttttCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATc < 4:1200127/143‑1 (MQ=255) ttttCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGc > 2:884427/1‑149 (MQ=255) ttttCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGc > 3:1173397/1‑149 (MQ=255) ttttCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCAGCGATGCGGCAGATAACCCGTTGCGCATc > 3:1200127/1‑143 (MQ=255) gTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCgg > 2:326647/1‑101 (MQ=255) gTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCgg < 1:326647/101‑1 (MQ=255) gTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCATATAACCCGTTGCGCATCGCAAGCCATAAAc < 2:207201/149‑1 (MQ=255) aTGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGTCAtt < 4:700604/100‑1 (MQ=255) aTGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCAtt > 3:700604/1‑100 (MQ=255) tGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACaa < 3:1405367/149‑1 (MQ=255) ccGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAgg > 4:396793/1‑149 (MQ=255) ttAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGc > 3:177383/1‑124 (MQ=255) ttAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATc > 1:36201/1‑149 (MQ=255) ttAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATc < 4:1173397/149‑1 (MQ=255) aGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCa < 2:437546/149‑1 (MQ=255) aGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCa > 2:498802/1‑149 (MQ=255) gAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTc > 3:651716/1‑149 (MQ=255) aaaGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGtt > 1:381701/1‑105 (MQ=255) gCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACaa < 3:531069/128‑1 (MQ=255) cGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGgcg > 2:1271316/1‑149 (MQ=255) ggTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATcc > 2:507011/1‑139 (MQ=255) ggTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATcc < 1:507011/139‑1 (MQ=255) gTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGcgcg > 2:115737/1‑149 (MQ=255) tAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATg < 1:1000693/130‑1 (MQ=255) tAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATg > 2:1000693/1‑130 (MQ=255) aaTCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAAt < 3:961987/127‑1 (MQ=255) aTCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCa > 1:954352/1‑69 (MQ=255) aTCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCa < 2:954352/69‑1 (MQ=255) ccTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACaa > 2:1244393/1‑119 (MQ=255) ccTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACaa > 4:679381/1‑119 (MQ=255) ccTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACaa < 3:679381/119‑1 (MQ=255) ccTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACaa < 1:1244393/119‑1 (MQ=255) cTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAg > 2:1174514/1‑149 (MQ=255) cTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAg < 4:1148152/149‑1 (MQ=255) cTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAgcgc > 1:1328261/1‑149 (MQ=255) cATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCgg < 3:719346/149‑1 (MQ=255) ttGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGt < 3:1142415/149‑1 (MQ=255) tGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTg < 2:1328261/149‑1 (MQ=255) aGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGAt > 4:260711/1‑149 (MQ=255) aGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGAt < 1:115737/149‑1 (MQ=255) gCTGGGCGCGGATCATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAACGAATGGACATCCAGTCCGGCGCGACGGTAGCGCggg < 4:1236771/144‑1 (MQ=255) gCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCggg > 3:1236771/1‑144 (MQ=255) cTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGACTGGATGTCCATTcct < 1:1391207/125‑2 (MQ=255) gcgcGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGtt < 1:998168/76‑1 (MQ=255) gcgcGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGtt > 2:998168/1‑76 (MQ=255) cgGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTc < 4:651716/149‑1 (MQ=255) gAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAAt > 1:507227/1‑102 (MQ=255) gAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAAt < 2:507227/102‑1 (MQ=255) gAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCt < 3:260711/149‑1 (MQ=255) aaCATGACCGGAGCCAGCGCCAGCCCTGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTg > 2:923868/1‑149 (MQ=255) cATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTcc < 4:194470/145‑1 (MQ=255) gACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCca < 3:1436253/88‑1 (MQ=255) gACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCca > 4:1436253/1‑88 (MQ=255) gACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAAcc > 3:538273/1‑149 (MQ=255) aCCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCa > 3:470786/1‑149 (MQ=255) ggagcgccgggCTGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAAc < 4:773443/75‑1 (MQ=255) ggagcgccgggCTGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAAc > 3:773443/3‑77 (MQ=255) ccagcgccagcCCGGCGCTCCATCCCCGGCACTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCGAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCa > 4:899300/1‑149 (MQ=255) agcgccgggCTGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGttt < 2:385737/129‑1 (MQ=255) agcgccgggCTGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGttt > 1:385737/1‑129 (MQ=255) agcgccagcCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCaac > 3:87703/1‑148 (MQ=255) agcgccagcCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCAAt > 1:469109/1‑149 (MQ=255) gcgccagcCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCAATg > 4:37254/1‑149 (MQ=255) gccagcCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCAATGtt < 4:470786/149‑1 (MQ=255) gccagcCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCAATGtt < 2:36201/149‑1 (MQ=255) cagcCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCa > 3:1218718/1‑65 (MQ=255) gcCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGAc > 3:943453/1‑100 (MQ=255) gcCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGAc < 4:943453/100‑1 (MQ=255) ccGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCAACATTGCGCag < 4:87703/149‑2 (MQ=255) | GCAGAGCTGTAACGGTCAGGCGTTCAGCGTCTGCGCCAGCCCATGCTGATAGCTTTTCCGGTGCAATGCCGACTACGGTTAGCGAAAGCGGTAAATCCTGCTCATTGAGCTGGGCGCGGAACATGACCGGAGCCAGCGCCAGCCCGGCGCTCCATCCCCGGCATTCATCGATGCGGCAGATAACCCGTTGCGCATCGCAAGCCATAAACCCACAAGGAATGGACATCCAGTCCGGCGCGACGGTAGCGCGGGTGATGCCGTTTTCCTGCAACCACTGCGCAATGTTGCGCAT > NC_000913/3111679‑3111970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |